Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACI3L7_RS00380 Genome accession   NZ_CP173387
Coordinates   88285..89664 (-) Length   459 a.a.
NCBI ID   WP_045369724.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB135     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 83285..94664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L7_RS00365 (ACI3L7_00365) - 84646..84855 (-) 210 WP_005439528.1 DUF1127 domain-containing protein -
  ACI3L7_RS00370 (ACI3L7_00370) - 84955..85884 (+) 930 WP_404970117.1 LysR substrate-binding domain-containing protein -
  ACI3L7_RS00375 (ACI3L7_00375) fusA 85981..88068 (-) 2088 WP_038892244.1 elongation factor G -
  ACI3L7_RS00380 (ACI3L7_00380) radA/sms 88285..89664 (-) 1380 WP_045369724.1 DNA repair protein RadA Machinery gene
  ACI3L7_RS00385 (ACI3L7_00385) - 89816..92164 (+) 2349 WP_404970118.1 PilZ domain-containing protein -
  ACI3L7_RS00390 (ACI3L7_00390) serB 92220..93200 (-) 981 WP_038891096.1 phosphoserine phosphatase -
  ACI3L7_RS00395 (ACI3L7_00395) - 93292..93897 (+) 606 WP_012128802.1 YtjB family periplasmic protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49305.72 Da        Isoelectric Point: 7.4131

>NTDB_id=958458 ACI3L7_RS00380 WP_045369724.1 88285..89664(-) (radA/sms) [Vibrio campbellii strain LB135]
MAKAKRAYVCNDCGADFPRWQGQCNACGAWNTITEVRIAASPTVARNERLSGYAGSATESKVQTLSEIDLQEVPRFTSGF
KELDRVLGGGVVPGAAILIGGNPGAGKSTLLLQTMCLLSSQMPTLYVTGEESLQQVAMRASRLGLPKEHLKMLSETNVDK
ICQIAEKEQPRIMVIDSIQVMHVSDVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSV
LLDGGTDSRFRTLRSHKNRFGAVNELGVFAMTGQGLKEVNNPSAIFLSRGEEETSGSSVMVVWEGTRPLLVEIQALVDYS
QLANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFVNVVGGVKVTETSADLALVMALLSSFRDRPLPKDVVVFGEVG
LAGEIRPVPSGQERLNEAFKHGFKKAIVPAANMPKGGIPGMQIHGVKKLSEAIEAFDEL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=958458 ACI3L7_RS00380 WP_045369724.1 88285..89664(-) (radA/sms) [Vibrio campbellii strain LB135]
ATGGCGAAAGCAAAACGAGCGTATGTTTGTAATGATTGTGGCGCGGATTTCCCACGTTGGCAGGGGCAGTGTAATGCGTG
TGGTGCATGGAACACGATTACTGAAGTTCGTATTGCTGCATCGCCAACGGTAGCACGCAACGAACGCTTATCTGGTTACG
CAGGCTCAGCAACGGAATCAAAAGTTCAAACCCTGTCAGAGATTGATCTGCAAGAAGTGCCCCGTTTTACGAGTGGCTTT
AAAGAGCTAGACCGAGTGCTTGGTGGTGGTGTAGTTCCGGGCGCTGCGATTCTTATCGGTGGTAACCCCGGCGCAGGTAA
GTCGACTTTGCTTTTGCAAACCATGTGTCTGTTGTCTTCGCAAATGCCTACTCTCTATGTGACGGGTGAGGAATCACTCC
AGCAAGTGGCAATGCGTGCTTCACGACTTGGGTTGCCAAAAGAGCACCTGAAGATGTTGTCGGAAACGAACGTTGACAAG
ATTTGCCAAATTGCAGAGAAAGAACAGCCGCGCATTATGGTGATTGACTCGATTCAAGTAATGCACGTGTCTGACGTTCA
GTCCTCGCCTGGTAGTGTCGCGCAGGTACGTGAATCGGCAACCGCGCTGACGCGTTATGCAAAGCAAAATAATGTGGCCG
TCTTTATTGTTGGTCACGTAACAAAAGATGGTACCCTTGCCGGCCCTAAAGTACTTGAGCACATTATTGACTGTTCAGTT
CTACTCGATGGTGGCACTGATAGCCGCTTCCGAACCTTACGTAGCCACAAAAACCGTTTTGGTGCGGTGAATGAACTTGG
CGTCTTTGCCATGACAGGGCAGGGACTGAAAGAGGTCAATAACCCTTCGGCGATTTTCCTTTCCCGCGGTGAAGAAGAGA
CGTCGGGTTCGTCCGTTATGGTGGTGTGGGAAGGTACGCGCCCTCTATTAGTAGAGATTCAAGCACTGGTGGACTACTCA
CAATTGGCAAACCCACGTCGCGTCGCGGTGGGCCTAGAACAAAACCGTCTTTCTTTATTATTGGCGGTGCTGCATAAGCA
CGGTGGCCTACAAATGGCCGATCAAGATGTGTTTGTGAATGTCGTTGGTGGTGTAAAAGTCACAGAGACCAGTGCTGACC
TTGCTCTAGTTATGGCGCTTTTGTCGAGTTTTCGCGATCGTCCACTACCAAAAGATGTGGTGGTGTTTGGTGAGGTTGGC
TTAGCGGGAGAGATTCGCCCAGTGCCGAGTGGCCAAGAGCGTTTGAATGAAGCATTCAAGCACGGCTTTAAGAAAGCGAT
CGTACCAGCAGCGAATATGCCAAAGGGCGGTATTCCTGGTATGCAAATCCATGGCGTTAAAAAACTGTCGGAAGCTATTG
AAGCATTTGATGAGTTGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(83-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.711

99.346

0.464
  radA Streptococcus mitis SK321

44.079

99.346

0.438
  radA Streptococcus pneumoniae Rx1

43.516

99.129

0.431
  radA Streptococcus pneumoniae D39

43.516

99.129

0.431
  radA Streptococcus pneumoniae R6

43.516

99.129

0.431
  radA Streptococcus pneumoniae TIGR4

43.516

99.129

0.431
  radA Streptococcus mitis NCTC 12261

43.516

99.129

0.431