Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   ACI3L9_RS12835 Genome accession   NZ_CP173385
Coordinates   2794684..2798064 (+) Length   1126 a.a.
NCBI ID   WP_079401264.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB198     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2789684..2803064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L9_RS12810 (ACI3L9_12810) sucC 2789776..2790942 (+) 1167 WP_005426700.1 ADP-forming succinate--CoA ligase subunit beta -
  ACI3L9_RS12815 (ACI3L9_12815) sucD 2790942..2791814 (+) 873 WP_005436989.1 succinate--CoA ligase subunit alpha -
  ACI3L9_RS12820 (ACI3L9_12820) znuB 2791945..2792730 (-) 786 WP_045377675.1 zinc ABC transporter permease subunit ZnuB -
  ACI3L9_RS12825 (ACI3L9_12825) znuC 2792723..2793511 (-) 789 WP_038892101.1 zinc ABC transporter ATP-binding protein ZnuC -
  ACI3L9_RS12830 (ACI3L9_12830) znuA 2793590..2794471 (+) 882 WP_038892099.1 zinc ABC transporter substrate-binding protein ZnuA -
  ACI3L9_RS12835 (ACI3L9_12835) tfoS 2794684..2798064 (+) 3381 WP_079401264.1 AraC family transcriptional regulator Regulator
  ACI3L9_RS12840 (ACI3L9_12840) - 2798834..2799061 (+) 228 WP_005426705.1 FeoA family protein -
  ACI3L9_RS12845 (ACI3L9_12845) feoB 2799061..2801337 (+) 2277 WP_079401084.1 Fe(2+) transporter permease subunit FeoB -
  ACI3L9_RS12850 (ACI3L9_12850) - 2801334..2801564 (+) 231 WP_005426709.1 FeoC-like transcriptional regulator -
  ACI3L9_RS12855 (ACI3L9_12855) - 2801674..2802195 (-) 522 WP_045455167.1 YqhA family protein -
  ACI3L9_RS12860 (ACI3L9_12860) - 2802346..2802774 (-) 429 WP_005382194.1 HIT domain-containing protein -

Sequence

Protein


Download         Length: 1126 a.a.        Molecular weight: 126968.37 Da        Isoelectric Point: 6.0319

>NTDB_id=958440 ACI3L9_RS12835 WP_079401264.1 2794684..2798064(+) (tfoS) [Vibrio campbellii strain LB198]
MLRQIALLFWAFILSFQAIASSEANAIFYPLPNQVKGTFIAAKKLFPGEQGGLWIHDVHGRVLFYDGQTTLPKSGSFLRN
KVEQLAYHKGSFWTFIENEVYQTYPNQERRLVFSLNPGSQIRKIGSSGNYIWVSDGAQFYTYNVETSELNSFSLLQLYQH
SNNSYVYINDAIFVETKWALATTSGVYLSEGSKFNHVVSSGKNYIEKVYYSHTRREILVGTLKGALIFNIYEPGKPVIRI
GASHVLTFAETNQEYWVGTEQGLYLYSFLTGEVTQVTPASFLELELASTKIYSLLNDNMGGMWIATNQGIRYYSLFSKKF
ERITFSSYDQQILSGRIRQTLTGPDGALWFADDHKLYRSNNGSITDVLNVSSQINEFAFQGERLWVATSTGLEIYSLKNL
QQMTFPYLQVIAGKTIDHITADGSNRLWISSGYQLFNIDAVNQAMRNFGSEWLVSKFLPAKITRLYDKEELLLIGTDHGV
YEYDGERIRFNHFSEKYGESLDIITANDGSQWFASAYGVFRTVPGSNEKQVMEMSVANSRPACLLSDSEGVWLASSVGLS
YYHLSGQLMKHYSSSSGLINNEFLPGICNVIRRAEDSDRQLIFGSQYGLVKADSSKLLVSNTPESKLIVSQVMLENEVVQ
VGSADLEEMKLPYGSSLSFLFGVMPKPDNQNLYYRLNESEKWQTLEGGQLTLEHLNSGDYHLQVSNDLQLASGLIGLDSK
FTVLKPWYLSKLAISGFTLAVIAVLALLMYWRSRYVLQANRDLAAQVTLKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
HVAQSIKSSIDSIANKLPIDVDSATQDHLSKTYWQLNELKSAPEDTSSGSQNYNLSQITQSVVDVWREDFSKAGINVELQ
DEQKASRISLESFNLDVIFNSIFANIIKRSFRGQLVKLTLEEGNDIVSLSFIDHGTQLPSKASTIRPTSTNNVDLSMDNL
PQLVAASGGHLSMFTSDAQNKIEISWPCAQEPSHVEEALPEFAQTQQPQQEEMSPEQEWLMKVYQLVAEHYHDPEFGTAS
AAKMLFMSERSLQRRFKSASSRTLKDYVTEVRLETACEQLLAGEKISEVAFNCGFNDPSYFSQKFKLHFGLPPSKFAMTQ
ESQTSL

Nucleotide


Download         Length: 3381 bp        

>NTDB_id=958440 ACI3L9_RS12835 WP_079401264.1 2794684..2798064(+) (tfoS) [Vibrio campbellii strain LB198]
TTGCTGCGCCAAATAGCCCTACTTTTTTGGGCTTTTATCCTCTCATTTCAAGCAATTGCTTCAAGTGAAGCGAATGCGAT
CTTTTACCCTTTGCCGAATCAGGTTAAGGGAACTTTTATTGCAGCGAAAAAATTGTTCCCCGGTGAACAAGGTGGGCTCT
GGATCCATGATGTTCATGGTCGTGTTCTGTTCTATGATGGCCAAACCACATTGCCAAAATCCGGTAGCTTTCTCAGAAAC
AAAGTAGAGCAGCTGGCTTACCACAAAGGTTCATTTTGGACATTTATTGAAAACGAGGTTTATCAAACTTACCCGAACCA
AGAACGTCGTTTAGTCTTTAGCCTCAACCCAGGCTCTCAGATCCGTAAGATTGGTTCATCCGGAAACTATATTTGGGTCA
GTGATGGTGCGCAGTTCTATACCTATAATGTTGAAACCAGCGAACTGAACTCCTTTTCTCTATTACAGCTCTATCAGCAT
AGCAACAACAGTTACGTCTATATTAATGACGCTATCTTTGTCGAAACCAAGTGGGCGTTGGCGACGACTTCAGGCGTATA
CCTATCAGAGGGCAGCAAGTTTAATCATGTTGTCTCATCGGGCAAAAATTACATCGAGAAAGTGTATTACTCCCATACTC
GTCGTGAAATCTTAGTCGGCACTTTAAAAGGCGCGTTGATATTTAATATCTATGAACCCGGCAAGCCTGTTATTCGAATT
GGCGCTTCTCATGTCTTAACCTTTGCTGAAACCAATCAAGAATACTGGGTAGGGACAGAGCAAGGTCTTTATTTGTATTC
CTTCTTAACTGGCGAAGTAACCCAAGTGACACCAGCAAGTTTTCTGGAACTAGAGCTCGCCAGTACCAAAATTTACTCGT
TGCTGAACGATAATATGGGGGGAATGTGGATTGCCACCAACCAAGGCATTCGCTATTACTCTCTGTTTAGTAAAAAGTTT
GAGCGAATCACGTTCAGCAGTTATGACCAACAAATACTCTCTGGTCGTATTCGGCAGACGCTTACCGGACCCGATGGTGC
ACTTTGGTTTGCGGACGATCATAAGTTGTATCGCTCGAACAATGGCAGCATTACCGATGTGTTGAATGTGTCGTCACAAA
TTAACGAATTTGCTTTTCAGGGTGAAAGGCTCTGGGTTGCTACGTCCACGGGTTTGGAAATATATAGCCTGAAAAACTTA
CAGCAGATGACATTCCCTTACCTGCAAGTCATCGCAGGCAAGACAATCGACCATATTACCGCTGATGGCTCCAATCGCCT
TTGGATATCCAGTGGTTATCAGCTATTTAATATTGATGCTGTTAACCAGGCTATGAGAAATTTTGGCAGCGAATGGTTAG
TGAGTAAGTTCTTACCCGCGAAGATTACGCGTCTGTACGACAAGGAAGAGTTGCTGCTGATAGGGACTGACCACGGCGTT
TACGAGTATGACGGAGAGCGAATTCGCTTTAACCATTTTTCAGAAAAGTACGGTGAATCACTCGATATTATTACCGCAAA
TGATGGTTCGCAGTGGTTTGCTTCCGCCTATGGCGTTTTCAGAACCGTTCCGGGCAGCAATGAAAAACAAGTGATGGAGA
TGAGTGTCGCAAACTCTCGCCCAGCTTGTTTGCTTAGTGATTCGGAAGGGGTGTGGCTTGCTTCTTCTGTTGGCTTAAGT
TACTACCATTTATCTGGACAGCTCATGAAGCATTACTCTTCTTCATCGGGCCTTATCAATAATGAATTCTTACCAGGCAT
TTGTAACGTTATCCGTCGTGCTGAAGATAGTGATCGCCAACTTATCTTTGGCTCTCAGTATGGGTTAGTTAAAGCTGACT
CGTCTAAATTGCTGGTTTCTAACACGCCAGAATCTAAGCTTATTGTTAGCCAAGTCATGCTGGAAAATGAAGTGGTGCAA
GTGGGTAGTGCCGACTTAGAAGAGATGAAGTTGCCTTATGGATCGTCCCTTAGTTTCCTTTTTGGTGTGATGCCCAAGCC
TGACAATCAGAATTTGTATTATCGCTTAAATGAAAGTGAAAAATGGCAAACGTTAGAAGGTGGGCAATTAACGTTAGAAC
ACCTTAATTCAGGCGATTACCACTTACAGGTTAGTAATGACTTACAACTGGCTTCGGGTCTGATCGGATTAGATTCCAAA
TTTACGGTGCTTAAACCATGGTATCTATCGAAGTTGGCCATATCGGGTTTTACCTTGGCTGTTATTGCGGTTCTTGCCCT
TCTAATGTACTGGCGCTCACGCTATGTGCTGCAAGCTAACCGAGATCTGGCAGCTCAAGTTACGTTAAAAACCAACCAGC
TGCGCCATCAAAGTCGAGTGTTGTTGACCAGTAACCAACAATTGAGAAAGCAGATTCAGGTAAGAAACCTGCTGGTGGAT
CATGTTGCTCAATCGATAAAGTCGAGTATTGATTCGATCGCGAACAAGCTTCCTATTGATGTGGATTCGGCAACTCAAGA
CCATTTATCCAAGACCTACTGGCAATTGAACGAGCTTAAAAGTGCTCCTGAAGACACCAGCAGCGGCAGTCAAAATTACA
ACTTAAGTCAGATAACCCAATCGGTGGTGGATGTTTGGCGCGAGGACTTTTCAAAAGCAGGCATTAATGTCGAACTGCAA
GATGAGCAAAAGGCGAGCCGTATTTCATTAGAGAGCTTTAACCTCGATGTCATCTTTAACAGCATCTTTGCCAACATCAT
CAAGCGCTCGTTCCGGGGACAGTTGGTTAAATTAACACTGGAAGAGGGCAATGATATTGTCTCGCTGAGCTTCATTGACC
ATGGTACTCAGTTGCCAAGTAAAGCATCGACAATACGCCCAACGAGCACCAACAATGTTGACTTAAGTATGGATAACCTG
CCTCAATTAGTTGCAGCCAGTGGCGGCCATTTATCGATGTTCACTTCTGATGCTCAAAATAAAATAGAGATTTCGTGGCC
ATGTGCTCAAGAGCCAAGCCATGTTGAGGAGGCGCTTCCTGAGTTTGCTCAGACACAGCAACCTCAACAAGAAGAGATGT
CGCCTGAGCAAGAGTGGTTAATGAAAGTGTATCAGTTAGTGGCTGAGCACTACCACGACCCAGAGTTTGGTACGGCATCT
GCCGCTAAGATGTTGTTTATGTCTGAGCGAAGCTTGCAGAGACGATTTAAGTCGGCGTCGTCCAGAACACTAAAAGATTA
TGTAACGGAAGTCAGGTTGGAGACCGCATGTGAGCAGTTGCTAGCAGGTGAGAAGATCAGTGAAGTTGCCTTCAACTGCG
GCTTCAATGACCCATCCTACTTTAGTCAGAAGTTTAAATTACACTTCGGGTTACCGCCGTCTAAGTTCGCGATGACACAA
GAGAGCCAAACAAGCCTGTAG

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1042-1116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

39.485

100

0.395