Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACI3L9_RS06495 Genome accession   NZ_CP173385
Coordinates   1435495..1436970 (+) Length   491 a.a.
NCBI ID   WP_005432834.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB198     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1430495..1441970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L9_RS06470 (ACI3L9_06470) - 1431616..1432581 (+) 966 WP_038891160.1 calcium/sodium antiporter -
  ACI3L9_RS06475 (ACI3L9_06475) kdsD 1432617..1433588 (+) 972 WP_045367607.1 arabinose-5-phosphate isomerase KdsD -
  ACI3L9_RS06480 (ACI3L9_06480) lptC 1433679..1434242 (+) 564 WP_005432835.1 LPS export ABC transporter periplasmic protein LptC -
  ACI3L9_RS06485 (ACI3L9_06485) lptA 1434223..1434717 (+) 495 WP_005432860.1 lipopolysaccharide transport periplasmic protein LptA -
  ACI3L9_RS06490 (ACI3L9_06490) lptB 1434719..1435444 (+) 726 WP_005432855.1 LPS export ABC transporter ATP-binding protein -
  ACI3L9_RS06495 (ACI3L9_06495) rpoN/rpoN1 1435495..1436970 (+) 1476 WP_005432834.1 RNA polymerase factor sigma-54 Machinery gene
  ACI3L9_RS06500 (ACI3L9_06500) hpf 1436994..1437281 (+) 288 WP_005432838.1 ribosome hibernation promoting factor -
  ACI3L9_RS06505 (ACI3L9_06505) ptsN 1437284..1437730 (+) 447 WP_005432846.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ACI3L9_RS06510 (ACI3L9_06510) rapZ 1437745..1438608 (+) 864 WP_045403515.1 RNase adapter RapZ -
  ACI3L9_RS06515 (ACI3L9_06515) - 1438611..1438886 (+) 276 WP_005432843.1 HPr family phosphocarrier protein -
  ACI3L9_RS06520 (ACI3L9_06520) mgtE 1439050..1440405 (+) 1356 WP_010450444.1 magnesium transporter -
  ACI3L9_RS06525 (ACI3L9_06525) pmbA 1440489..1441832 (-) 1344 WP_010450446.1 metalloprotease PmbA -

Sequence

Protein


Download         Length: 491 a.a.        Molecular weight: 55074.67 Da        Isoelectric Point: 4.3082

>NTDB_id=958401 ACI3L9_RS06495 WP_005432834.1 1435495..1436970(+) (rpoN/rpoN1) [Vibrio campbellii strain LB198]
MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLEVEEGHDEPQANGEDKSASESADNSANEANDAS
EPDLPDSSDVIEKSEISSELEIDTTWDDVYSANTGSTGLALDDDMPVYQGETTESLHDYLMWQLDLTPFSETDRTIALAI
IDAIDDYGYLTLSPEEIHESFDNEEVELDEVEAVRKRIQQFDPLGVASRNLQECLLLQLATFPEDTPWLAEAKMVLSDHI
DHLGNRDYKLVIKETKLKEADLREVLKLIQQLDPRPGSRITPDDTEYVIPDVSVFKDHGKWTVSINPDSIPKLKVNQQYA
QLGKGNSADSQYIRSNLQEAKWLIKSLESRNETLLKVARCIVEHQQDFFEYGEEAMKPMVLNDVALDVDMHESTISRVTT
QKFMHTPRGIFELKYFFSSHVSTDNGGECSSTAIRALIKKLVAAENTAKPLSDSKIAALLADQGIQVARRTIAKYRESLG
IAPSSQRKRLL

Nucleotide


Download         Length: 1476 bp        

>NTDB_id=958401 ACI3L9_RS06495 WP_005432834.1 1435495..1436970(+) (rpoN/rpoN1) [Vibrio campbellii strain LB198]
ATGAAACCTTCATTACAACTCAAGCTAGGTCAACAGTTAGCCATGACGCCACAGCTGCAGCAAGCGATTCGTTTGTTGCA
ATTGTCGACGCTCGATCTTCAACAAGAAATCCAAGAAGCGTTGGACTCCAACCCGCTACTGGAAGTTGAAGAAGGCCACG
ATGAGCCTCAAGCAAACGGTGAAGACAAATCAGCGTCTGAATCTGCTGATAACAGTGCGAACGAAGCTAACGATGCCTCA
GAACCCGACCTTCCAGATAGCTCAGACGTGATTGAAAAATCTGAAATCAGCTCTGAGCTAGAAATTGATACCACTTGGGA
TGACGTATACAGCGCAAACACGGGCAGCACAGGCCTAGCGCTGGATGATGACATGCCCGTCTACCAAGGTGAGACCACTG
AATCACTGCATGATTACCTTATGTGGCAGTTAGACTTAACGCCTTTCAGTGAAACCGACCGCACCATCGCCCTCGCGATC
ATCGATGCCATCGACGACTACGGCTACCTAACCCTATCCCCTGAAGAAATTCACGAGAGCTTCGACAACGAAGAAGTGGA
ATTGGATGAAGTAGAAGCGGTACGTAAGCGTATTCAGCAATTTGACCCGCTCGGTGTAGCCTCTCGCAACCTACAAGAGT
GCCTACTGCTGCAACTGGCAACTTTCCCTGAAGACACGCCATGGCTTGCTGAGGCGAAAATGGTGTTGAGCGATCACATC
GACCACCTTGGCAATCGTGACTACAAGCTGGTCATCAAAGAGACTAAGCTTAAAGAAGCGGACTTGCGTGAAGTATTGAA
GTTGATTCAACAACTTGACCCACGCCCAGGTAGTCGTATCACACCCGATGACACTGAATACGTCATTCCGGATGTGTCCG
TATTTAAAGATCATGGTAAGTGGACCGTCTCCATAAACCCTGACAGCATTCCGAAACTAAAAGTAAATCAACAATATGCG
CAACTAGGCAAAGGCAACAGTGCGGATAGCCAGTACATTCGCAGCAATTTGCAAGAGGCAAAATGGCTGATTAAGAGCCT
AGAAAGCAGAAACGAGACGCTTCTCAAAGTTGCAAGATGTATTGTTGAACATCAACAAGATTTCTTCGAGTATGGTGAAG
AAGCCATGAAACCAATGGTGCTAAACGACGTAGCATTGGATGTGGACATGCATGAATCGACAATTTCTCGTGTAACAACA
CAGAAGTTTATGCATACCCCACGTGGCATTTTTGAATTGAAGTACTTCTTCTCTAGCCATGTTAGTACAGACAATGGTGG
AGAGTGTTCCTCCACAGCAATTCGCGCACTCATCAAAAAGTTGGTCGCAGCGGAGAATACCGCTAAGCCACTGAGTGATA
GCAAAATTGCTGCTCTTCTGGCTGACCAGGGGATTCAAGTCGCGAGACGTACGATAGCGAAATATCGTGAATCCTTGGGT
ATCGCCCCTTCGAGTCAGCGCAAACGCCTACTTTAG

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(132-319)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(331-489)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

43.936

100

0.45