Detailed information NTG0958386

Bioinformatically predicted

Overview

• Name: radA/sms
• Type: Machinery gene
• Locus tag: ACI3L9_RS05160
• Genome accession: NZ_CP173385
• Coordinates: 1167549..1168928 (-)
• Length: 459 a.a.
• NCBI ID: WP_045369724.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain LB198
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1162549..1173928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI3L9_RS05150 (ACI3L9_05150)	-	1164247..1165098 (+)	852	WP_038892243.1	hypothetical protein	-
ACI3L9_RS05155 (ACI3L9_05155)	fusA	1165245..1167332 (-)	2088	WP_005530296.1	elongation factor G	-
ACI3L9_RS05160 (ACI3L9_05160)	radA/sms	1167549..1168928 (-)	1380	WP_045369724.1	DNA repair protein RadA	Machinery gene
ACI3L9_RS05165 (ACI3L9_05165)	-	1169080..1171428 (+)	2349	WP_079401012.1	PilZ domain-containing protein	-
ACI3L9_RS05170 (ACI3L9_05170)	serB	1171484..1172464 (-)	981	WP_079401011.1	phosphoserine phosphatase	-
ACI3L9_RS05175 (ACI3L9_05175)	-	1172556..1173161 (+)	606	WP_012128802.1	YtjB family periplasmic protein	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 49305.72 Da
• Isoelectric Point: 7.4131

>NTDB_id=958386 ACI3L9_RS05160 WP_045369724.1 1167549..1168928(-) (radA/sms) [Vibrio campbellii strain LB198]
MAKAKRAYVCNDCGADFPRWQGQCNACGAWNTITEVRIAASPTVARNERLSGYAGSATESKVQTLSEIDLQEVPRFTSGF
KELDRVLGGGVVPGAAILIGGNPGAGKSTLLLQTMCLLSSQMPTLYVTGEESLQQVAMRASRLGLPKEHLKMLSETNVDK
ICQIAEKEQPRIMVIDSIQVMHVSDVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSV
LLDGGTDSRFRTLRSHKNRFGAVNELGVFAMTGQGLKEVNNPSAIFLSRGEEETSGSSVMVVWEGTRPLLVEIQALVDYS
QLANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFVNVVGGVKVTETSADLALVMALLSSFRDRPLPKDVVVFGEVG
LAGEIRPVPSGQERLNEAFKHGFKKAIVPAANMPKGGIPGMQIHGVKKLSEAIEAFDEL

Nucleotide

• Length: 1380 bp

>NTDB_id=958386 ACI3L9_RS05160 WP_045369724.1 1167549..1168928(-) (radA/sms) [Vibrio campbellii strain LB198]
ATGGCGAAAGCAAAACGAGCGTATGTTTGTAATGATTGTGGCGCGGATTTCCCACGTTGGCAGGGGCAGTGTAATGCGTG
TGGTGCATGGAACACGATTACTGAAGTTCGTATTGCTGCATCGCCAACGGTAGCACGCAACGAACGCTTATCTGGTTACG
CAGGCTCAGCAACGGAATCAAAAGTTCAAACTCTGTCGGAGATTGATCTGCAAGAAGTGCCCCGTTTTACGAGTGGCTTT
AAAGAGCTAGACCGAGTGCTTGGTGGTGGTGTGGTTCCGGGCGCTGCGATTCTTATCGGTGGTAACCCCGGCGCAGGTAA
GTCGACTTTGCTTTTGCAAACCATGTGTCTGTTGTCTTCGCAAATGCCTACTCTCTATGTGACGGGTGAGGAATCGCTCC
AGCAAGTTGCAATGCGTGCCTCACGACTTGGGTTGCCAAAAGAGCACCTGAAGATGTTGTCGGAAACAAACGTCGACAAG
ATTTGCCAAATTGCAGAGAAAGAACAGCCGCGCATTATGGTGATTGACTCGATTCAGGTAATGCATGTGTCTGACGTTCA
GTCCTCGCCGGGGAGTGTCGCTCAGGTGCGTGAATCGGCAACCGCGCTGACGCGTTATGCAAAGCAAAATAATGTGGCCG
TCTTTATTGTTGGTCACGTAACAAAAGATGGTACCCTTGCCGGCCCTAAAGTACTTGAGCACATTATTGACTGTTCAGTT
CTACTCGATGGTGGTACTGATAGCCGCTTCCGAACCTTACGTAGCCACAAAAACCGTTTTGGTGCGGTGAATGAACTTGG
CGTCTTTGCCATGACGGGGCAGGGACTGAAAGAGGTCAATAACCCTTCGGCGATTTTCCTTTCCCGCGGTGAAGAAGAGA
CGTCGGGTTCGTCCGTTATGGTGGTGTGGGAAGGTACGCGCCCTCTATTAGTAGAGATTCAAGCACTGGTGGACTACTCA
CAATTGGCAAACCCACGTCGCGTCGCGGTGGGCCTAGAACAAAACCGTCTGTCTTTATTATTGGCGGTGCTGCATAAGCA
CGGTGGCCTACAAATGGCCGATCAAGATGTGTTTGTGAATGTCGTTGGTGGTGTAAAAGTCACAGAGACCAGTGCTGACC
TTGCGCTAGTTATGGCGCTTTTGTCGAGTTTTCGCGATCGTCCACTACCAAAAGATGTGGTGGTGTTTGGTGAGGTTGGC
TTAGCGGGAGAGATTCGCCCAGTGCCGAGTGGCCAAGAGCGTTTGAATGAAGCATTCAAGCACGGCTTTAAGAAAGCGAT
CGTACCAGCAGCGAATATGCCAAAGGGCGGTATTCCTGGTATGCAAATCCATGGCGTTAAAAAACTGTCGGAGGCTATTG
AAGCATTTGATGAGTTGTAA

Domains

Predicted by InterProScan.

• AAA domain (AAA_25) (83-224)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (347-432)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA/sms	Bacillus subtilis subsp. subtilis str. 168	46.711	99.346	0.464
radA	Streptococcus mitis SK321	44.079	99.346	0.438
radA	Streptococcus pneumoniae Rx1	43.516	99.129	0.431
radA	Streptococcus pneumoniae D39	43.516	99.129	0.431
radA	Streptococcus pneumoniae R6	43.516	99.129	0.431
radA	Streptococcus pneumoniae TIGR4	43.516	99.129	0.431
radA	Streptococcus mitis NCTC 12261	43.516	99.129	0.431