Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   AABA07_RS05030 Genome accession   NZ_AP028608
Coordinates   992746..993816 (-) Length   356 a.a.
NCBI ID   WP_000817884.1    Uniprot ID   C1C7D0
Organism   Streptococcus pneumoniae strain Sep3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 987746..998816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA07_RS05015 (TKY120829_10040) - 988828..989871 (+) 1044 WP_000752697.1 dihydrolipoamide acetyltransferase -
  AABA07_RS05020 (TKY120829_10050) lpdA 989917..991620 (+) 1704 WP_001162928.1 dihydrolipoyl dehydrogenase -
  AABA07_RS05025 (TKY120829_10060) - 991684..992673 (+) 990 WP_000873991.1 lipoate--protein ligase -
  AABA07_RS05030 (TKY120829_10070) xerS 992746..993816 (-) 1071 WP_000817884.1 tyrosine recombinase XerS Machinery gene
  AABA07_RS05035 (TKY120829_10080) - 994400..995950 (-) 1551 WP_000392545.1 ClC family H(+)/Cl(-) exchange transporter -
  AABA07_RS05040 (TKY120829_10090) - 995966..996745 (-) 780 WP_000201133.1 ribonuclease HII -
  AABA07_RS05045 (TKY120829_10100) ylqF 996732..997583 (-) 852 WP_000201300.1 ribosome biogenesis GTPase YlqF -
  AABA07_RS05050 - 997651..997860 (+) 210 WP_078372367.1 hypothetical protein -
  AABA07_RS05055 (TKY120829_10110) - 998001..998666 (-) 666 Protein_1000 IS1380-like element ISSpn5 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41144.18 Da        Isoelectric Point: 9.6220

>NTDB_id=95836 AABA07_RS05030 WP_000817884.1 992746..993816(-) (xerS) [Streptococcus pneumoniae strain Sep3]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVSDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=95836 AABA07_RS05030 WP_000817884.1 992746..993816(-) (xerS) [Streptococcus pneumoniae strain Sep3]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAACTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCTAGCACACAAGTCACTGACCTCTATACCCATATTGTTAGTGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1C7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.719

100

0.997

Multiple sequence alignment