Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACI3L6_RS11945 Genome accession   NZ_CP173383
Coordinates   2679051..2680526 (+) Length   491 a.a.
NCBI ID   WP_005432834.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB314     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2674051..2685526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L6_RS11920 (ACI3L6_11920) - 2675172..2676137 (+) 966 WP_038891160.1 calcium/sodium antiporter -
  ACI3L6_RS11925 (ACI3L6_11925) kdsD 2676173..2677144 (+) 972 WP_045367607.1 arabinose-5-phosphate isomerase KdsD -
  ACI3L6_RS11930 (ACI3L6_11930) lptC 2677235..2677798 (+) 564 WP_005432835.1 LPS export ABC transporter periplasmic protein LptC -
  ACI3L6_RS11935 (ACI3L6_11935) lptA 2677779..2678273 (+) 495 WP_005432860.1 lipopolysaccharide transport periplasmic protein LptA -
  ACI3L6_RS11940 (ACI3L6_11940) lptB 2678275..2679000 (+) 726 WP_005432855.1 LPS export ABC transporter ATP-binding protein -
  ACI3L6_RS11945 (ACI3L6_11945) rpoN/rpoN1 2679051..2680526 (+) 1476 WP_005432834.1 RNA polymerase factor sigma-54 Machinery gene
  ACI3L6_RS11950 (ACI3L6_11950) hpf 2680550..2680837 (+) 288 WP_005432838.1 ribosome hibernation promoting factor -
  ACI3L6_RS11955 (ACI3L6_11955) ptsN 2680840..2681286 (+) 447 WP_005432846.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ACI3L6_RS11960 (ACI3L6_11960) rapZ 2681301..2682164 (+) 864 WP_045403515.1 RNase adapter RapZ -
  ACI3L6_RS11965 (ACI3L6_11965) - 2682167..2682442 (+) 276 WP_005432843.1 HPr family phosphocarrier protein -
  ACI3L6_RS11970 (ACI3L6_11970) mgtE 2682606..2683961 (+) 1356 WP_010450444.1 magnesium transporter -
  ACI3L6_RS11975 (ACI3L6_11975) pmbA 2684045..2685388 (-) 1344 WP_010450446.1 metalloprotease PmbA -

Sequence

Protein


Download         Length: 491 a.a.        Molecular weight: 55074.67 Da        Isoelectric Point: 4.3082

>NTDB_id=958340 ACI3L6_RS11945 WP_005432834.1 2679051..2680526(+) (rpoN/rpoN1) [Vibrio campbellii strain LB314]
MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLEVEEGHDEPQANGEDKSASESADNSANEANDAS
EPDLPDSSDVIEKSEISSELEIDTTWDDVYSANTGSTGLALDDDMPVYQGETTESLHDYLMWQLDLTPFSETDRTIALAI
IDAIDDYGYLTLSPEEIHESFDNEEVELDEVEAVRKRIQQFDPLGVASRNLQECLLLQLATFPEDTPWLAEAKMVLSDHI
DHLGNRDYKLVIKETKLKEADLREVLKLIQQLDPRPGSRITPDDTEYVIPDVSVFKDHGKWTVSINPDSIPKLKVNQQYA
QLGKGNSADSQYIRSNLQEAKWLIKSLESRNETLLKVARCIVEHQQDFFEYGEEAMKPMVLNDVALDVDMHESTISRVTT
QKFMHTPRGIFELKYFFSSHVSTDNGGECSSTAIRALIKKLVAAENTAKPLSDSKIAALLADQGIQVARRTIAKYRESLG
IAPSSQRKRLL

Nucleotide


Download         Length: 1476 bp        

>NTDB_id=958340 ACI3L6_RS11945 WP_005432834.1 2679051..2680526(+) (rpoN/rpoN1) [Vibrio campbellii strain LB314]
ATGAAACCTTCATTACAACTCAAGCTAGGTCAACAGTTAGCCATGACGCCACAGCTGCAGCAAGCGATTCGTTTGTTGCA
ATTGTCGACGCTCGATCTTCAACAAGAAATCCAAGAAGCGTTGGACTCCAACCCGCTACTGGAAGTTGAAGAAGGCCACG
ATGAGCCTCAAGCAAACGGTGAAGACAAATCAGCGTCTGAATCTGCTGATAACAGTGCGAACGAAGCTAACGATGCCTCA
GAACCCGACCTTCCAGATAGCTCAGACGTGATTGAAAAATCTGAAATCAGCTCTGAGCTAGAAATTGATACCACTTGGGA
TGACGTATACAGCGCAAACACGGGCAGCACAGGCCTAGCGCTGGATGATGACATGCCCGTCTACCAAGGTGAGACCACTG
AATCACTGCATGATTACCTTATGTGGCAGTTAGACTTAACGCCTTTCAGTGAAACCGACCGCACCATCGCCCTCGCGATC
ATCGATGCCATCGACGACTACGGCTACCTAACCCTATCCCCTGAAGAAATTCACGAGAGCTTCGACAACGAAGAAGTGGA
ATTGGATGAAGTAGAAGCGGTACGTAAGCGTATTCAGCAATTTGACCCGCTCGGTGTAGCCTCTCGCAACCTACAAGAGT
GCCTACTGCTGCAACTGGCAACTTTCCCTGAAGACACGCCATGGCTTGCTGAGGCGAAAATGGTGTTGAGCGATCACATC
GACCACCTTGGCAATCGTGACTACAAGCTGGTCATCAAAGAGACTAAGCTTAAAGAAGCGGACTTGCGTGAAGTATTGAA
GTTGATTCAACAACTTGACCCACGCCCAGGTAGTCGTATCACACCCGATGACACTGAATACGTCATTCCGGATGTGTCCG
TATTTAAAGATCATGGTAAGTGGACCGTCTCCATAAACCCTGACAGCATTCCGAAACTAAAAGTAAATCAACAATATGCG
CAACTAGGCAAAGGCAACAGTGCGGATAGCCAGTACATTCGCAGCAATTTGCAAGAGGCAAAATGGCTGATTAAGAGCCT
AGAAAGCAGAAACGAGACGCTTCTCAAAGTTGCAAGATGTATTGTTGAACATCAACAAGATTTCTTCGAGTATGGTGAAG
AAGCCATGAAACCAATGGTGCTAAACGACGTAGCATTGGATGTGGACATGCATGAATCGACAATTTCTCGTGTAACAACA
CAGAAGTTTATGCATACCCCACGTGGCATTTTTGAATTGAAGTACTTCTTCTCTAGCCATGTTAGTACAGACAATGGTGG
AGAGTGTTCCTCCACAGCAATTCGCGCACTCATCAAAAAGTTGGTCGCAGCGGAGAATACCGCTAAGCCACTGAGTGATA
GCAAAATTGCTGCTCTTCTGGCTGACCAGGGGATTCAAGTCGCGAGACGTACGATAGCGAAATATCGTGAATCCTTGGGT
ATCGCCCCTTCGAGTCAGCGCAAACGCCTACTTTAG

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(132-319)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(331-489)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

43.936

100

0.45