Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACI3L6_RS05020 Genome accession   NZ_CP173383
Coordinates   1135918..1136862 (-) Length   314 a.a.
NCBI ID   WP_079402365.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB314     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1130918..1141862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L6_RS05005 (ACI3L6_05005) - 1131597..1133789 (-) 2193 WP_079402368.1 TonB-dependent siderophore receptor -
  ACI3L6_RS05010 (ACI3L6_05010) - 1133928..1134911 (-) 984 WP_079402367.1 siderophore ABC transporter substrate-binding protein -
  ACI3L6_RS05015 (ACI3L6_05015) - 1134968..1135921 (-) 954 WP_079402366.1 iron chelate uptake ABC transporter family permease subunit -
  ACI3L6_RS05020 (ACI3L6_05020) ceuB 1135918..1136862 (-) 945 WP_079402365.1 ABC transporter permease Machinery gene
  ACI3L6_RS05025 (ACI3L6_05025) - 1137273..1139408 (+) 2136 WP_079402364.1 condensation domain-containing protein -
  ACI3L6_RS05030 (ACI3L6_05030) - 1139587..1140330 (-) 744 WP_079402401.1 metallophosphoesterase -
  ACI3L6_RS05035 (ACI3L6_05035) - 1140422..1141300 (-) 879 WP_079402363.1 AEC family transporter -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 33770.61 Da        Isoelectric Point: 8.4649

>NTDB_id=958310 ACI3L6_RS05020 WP_079402365.1 1135918..1136862(-) (ceuB) [Vibrio campbellii strain LB314]
MNAKIIFVFFLLCIVSIFIGANPIDWSLLLKMDENAWLPITASRLPRLVALILTGAGLAMCGVILQHIVRNRFVEPGTTG
GLDAAKLGILVSIVMLPNSDKLERMIFAVVFCFAAGLIYIAIVRKIKFSNSALVPVIGLMFGSVLSAIAEFYAYQHNVLQ
SMSGWLMGDFSKVVQEHYEIIYLILPTTLLTYFYANKFTVMGMGEDAASNLGINFATTAALGLMLVSVTVAVTVVTVGAI
HFVGLVIPNLVALKYGDHLKNTLPIVALGGASLLIFCDVISRLVVFPFEVPIGLTASAIGGTLFLLLLLKGARA

Nucleotide


Download         Length: 945 bp        

>NTDB_id=958310 ACI3L6_RS05020 WP_079402365.1 1135918..1136862(-) (ceuB) [Vibrio campbellii strain LB314]
ATGAACGCTAAAATTATCTTTGTTTTCTTTTTATTGTGTATCGTTTCCATTTTTATTGGCGCCAATCCAATCGATTGGTC
ACTACTGCTGAAGATGGACGAAAATGCTTGGTTGCCGATTACTGCTAGCAGACTTCCGAGGTTGGTTGCGTTGATTCTAA
CAGGGGCCGGCTTGGCGATGTGCGGCGTCATCTTGCAACACATCGTCAGAAATCGTTTTGTAGAGCCTGGGACTACCGGC
GGCCTAGATGCTGCCAAGCTTGGTATTTTGGTATCGATCGTCATGTTGCCAAATTCAGATAAGCTTGAGCGCATGATTTT
TGCTGTCGTCTTTTGCTTTGCAGCAGGGCTCATTTACATCGCGATCGTACGAAAAATTAAATTCAGTAATTCAGCATTGG
TCCCAGTCATTGGACTGATGTTCGGCAGCGTATTGAGCGCAATCGCTGAATTTTACGCTTATCAACATAACGTTCTTCAA
AGCATGTCTGGCTGGTTAATGGGAGACTTTTCTAAGGTCGTACAGGAACACTACGAGATCATTTACCTGATCTTACCCAC
CACTCTGTTGACCTACTTCTACGCAAATAAATTTACCGTCATGGGCATGGGAGAAGATGCAGCATCTAACTTGGGCATTA
ACTTCGCAACAACGGCAGCGTTAGGTCTGATGCTGGTTTCCGTGACCGTTGCTGTGACCGTCGTGACCGTCGGGGCAATT
CATTTTGTCGGTTTAGTGATCCCAAACCTTGTCGCACTAAAATATGGCGATCACCTGAAAAACACACTGCCAATCGTGGC
ATTGGGTGGCGCATCACTGCTTATTTTTTGCGATGTGATAAGCAGACTTGTGGTCTTTCCTTTTGAGGTTCCGATCGGCC
TTACCGCGAGTGCGATTGGTGGCACCCTATTTCTTTTATTGCTCCTTAAAGGAGCACGTGCATGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

45.791

94.586

0.433