Detailed information NTG0958208

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACI1PX_RS07135
• Genome accession: NZ_CP173359
• Coordinates: 1490507..1491511 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa isolate CF2843GFP
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1485507..1496511

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI1PX_RS07105 (ACI1PX_07105)	fghA	1485599..1486450 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
ACI1PX_RS07110 (ACI1PX_07110)	ispF	1486521..1486994 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACI1PX_RS07115 (ACI1PX_07115)	truD	1486991..1488058 (+)	1068	WP_014602573.1	tRNA pseudouridine(13) synthase TruD	-
ACI1PX_RS07120 (ACI1PX_07120)	surE	1488046..1488795 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACI1PX_RS07125 (ACI1PX_07125)	-	1488828..1489463 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACI1PX_RS07130 (ACI1PX_07130)	-	1489509..1490402 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACI1PX_RS07135 (ACI1PX_07135)	rpoS	1490507..1491511 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACI1PX_RS07140 (ACI1PX_07140)	fdxA	1491938..1492261 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ACI1PX_RS07145 (ACI1PX_07145)	mutS	1492328..1494895 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ACI1PX_RS07150 (ACI1PX_07150)	-	1495021..1496028 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=958208 ACI1PX_RS07135 WP_003113871.1 1490507..1491511(+) (rpoS) [Pseudomonas aeruginosa isolate CF2843GFP]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=958208 ACI1PX_RS07135 WP_003113871.1 1490507..1491511(+) (rpoS) [Pseudomonas aeruginosa isolate CF2843GFP]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653