Detailed information NTG0958180

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ACI1GX_RS08400
• Genome accession: NZ_CP173358
• Coordinates: 1815019..1816008 (+)
• Length: 329 a.a.
• NCBI ID: WP_012478568.1
• Uniprot ID: -
• Organism: Actinobacillus pleuropneumoniae strain APL2305225E
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1810019..1821008

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI1GX_RS08380 (ACI1GX_08370)	-	1810590..1811558 (-)	969	WP_404811294.1	mannose/fructose/sorbose PTS transporter subunit IIA	-
ACI1GX_RS08385 (ACI1GX_08375)	-	1811748..1813097 (-)	1350	WP_005616063.1	GntP family permease	-
ACI1GX_RS08390 (ACI1GX_08380)	-	1813276..1813788 (+)	513	WP_005613248.1	gluconokinase	-
ACI1GX_RS08395 (ACI1GX_08385)	gntR	1813883..1814881 (-)	999	WP_237593373.1	gluconate operon transcriptional repressor GntR	-
ACI1GX_RS08400 (ACI1GX_08390)	cytR	1815019..1816008 (+)	990	WP_012478568.1	substrate-binding domain-containing protein	Regulator
ACI1GX_RS08405 (ACI1GX_08395)	rbsD	1816129..1816548 (+)	420	WP_005602428.1	D-ribose pyranase	-
ACI1GX_RS08410 (ACI1GX_08400)	rbsA	1816561..1818042 (+)	1482	WP_005605674.1	ribose ABC transporter ATP-binding protein RbsA	-
ACI1GX_RS08415 (ACI1GX_08405)	rbsC	1818095..1819054 (+)	960	WP_237593374.1	ribose ABC transporter permease	-
ACI1GX_RS08420 (ACI1GX_08410)	rbsB	1819078..1819950 (+)	873	WP_005599112.1	ribose ABC transporter substrate-binding protein RbsB	-
ACI1GX_RS08425 (ACI1GX_08415)	rbsK	1820023..1820934 (+)	912	WP_005599115.1	ribokinase	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 36918.24 Da
• Isoelectric Point: 6.7245

>NTDB_id=958180 ACI1GX_RS08400 WP_012478568.1 1815019..1816008(+) (cytR) [Actinobacillus pleuropneumoniae strain APL2305225E]
MATMKDIARIAGVSTSTVSHVINNSRFVSDEIRQRIEKVVAELNYTPSLVARSLKVKETNTIGMLVTTSSNPFFAEVVRH
VERYCERHNYHLILVNTDGNSTNLAQHLARLLRKQVDGLLLMCSEPQDLDESVMANIHLPMVVIDWWQQALKADNVHENS
ELGGYLATKALIDAGYTEIAVITGEQSKSHTLNRLQGYKRAILEANLPIRPEWIVEGHFDYQAGLEYASRLLALNSRPQA
IFAMSDSIAIGVYQAAWQAGLRIPQDIAVIGYDNIELAQYLSPPLSTIHQPKARLAKNAVEQLIARIHQPDKAYQEIELT
PELVVRRSF

Nucleotide

• Length: 990 bp

>NTDB_id=958180 ACI1GX_RS08400 WP_012478568.1 1815019..1816008(+) (cytR) [Actinobacillus pleuropneumoniae strain APL2305225E]
ATGGCAACAATGAAAGATATAGCTCGGATTGCGGGCGTTTCAACTTCCACCGTTTCCCATGTGATCAATAACTCACGTTT
TGTGAGTGACGAAATTCGTCAGCGGATTGAAAAAGTGGTGGCGGAACTCAATTACACGCCTTCGTTAGTCGCTCGCAGTC
TGAAAGTGAAAGAAACCAATACGATCGGTATGTTGGTAACCACCAGTAGTAACCCGTTTTTTGCGGAAGTAGTACGTCAC
GTCGAACGTTATTGTGAACGCCATAATTATCATTTAATTTTAGTGAATACTGACGGTAACAGTACCAATTTAGCACAACA
TTTAGCCCGCTTGTTACGCAAACAAGTGGACGGTTTATTATTAATGTGTTCCGAGCCACAAGATTTGGACGAAAGTGTGA
TGGCGAATATTCACTTGCCAATGGTGGTGATTGACTGGTGGCAACAGGCATTGAAAGCGGATAACGTACACGAAAATTCG
GAATTAGGTGGTTATCTTGCAACAAAAGCGTTAATTGATGCCGGTTATACCGAGATTGCGGTAATTACCGGTGAGCAATC
GAAATCGCATACATTAAACCGTTTACAAGGTTACAAGCGGGCGATTCTAGAGGCAAATTTGCCAATTCGTCCGGAATGGA
TTGTGGAAGGTCACTTCGATTATCAAGCCGGTTTGGAATATGCAAGCCGGTTATTGGCACTAAACTCTCGCCCGCAAGCG
ATTTTTGCGATGAGCGATAGCATTGCAATCGGTGTATATCAAGCCGCTTGGCAAGCCGGTTTACGTATTCCGCAAGATAT
TGCGGTGATCGGTTACGATAATATCGAATTGGCACAATATCTCTCTCCTCCGCTTTCTACGATTCATCAACCCAAAGCCC
GTTTGGCGAAGAATGCGGTGGAGCAGTTGATCGCCCGTATTCATCAGCCGGATAAAGCTTATCAAGAAATCGAACTTACT
CCCGAACTTGTCGTTCGCCGTTCTTTTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (169-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	36.061	100	0.362