Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACI1GX_RS02405 Genome accession   NZ_CP173358
Coordinates   507101..508048 (-) Length   315 a.a.
NCBI ID   WP_005597088.1    Uniprot ID   A0ABM6X1S0
Organism   Actinobacillus pleuropneumoniae strain APL2305225E     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 502101..513048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI1GX_RS02380 (ACI1GX_02375) - 502200..503174 (-) 975 WP_012478345.1 IS30-like element ISApl1 family transposase -
  ACI1GX_RS02385 (ACI1GX_02380) - 503262..504521 (-) 1260 WP_404811314.1 inorganic phosphate transporter -
  ACI1GX_RS02390 (ACI1GX_02385) - 504531..505211 (-) 681 WP_005597094.1 TIGR00153 family protein -
  ACI1GX_RS02395 (ACI1GX_02390) - 505400..506158 (-) 759 WP_005604228.1 ABC transporter ATP-binding protein -
  ACI1GX_RS02400 (ACI1GX_02395) - 506160..507101 (-) 942 WP_005597090.1 iron chelate uptake ABC transporter family permease subunit -
  ACI1GX_RS02405 (ACI1GX_02400) ceuB 507101..508048 (-) 948 WP_005597088.1 ABC transporter permease Machinery gene
  ACI1GX_RS02410 (ACI1GX_02405) - 508135..509043 (-) 909 WP_005597086.1 siderophore ABC transporter substrate-binding protein -
  ACI1GX_RS02415 (ACI1GX_02410) - 509223..510686 (+) 1464 WP_005620833.1 replicative DNA helicase -
  ACI1GX_RS02420 (ACI1GX_02415) - 510676..510963 (+) 288 WP_005600927.1 YcgL domain-containing protein -
  ACI1GX_RS02425 (ACI1GX_02420) nrdR 510963..511412 (+) 450 WP_005597079.1 transcriptional regulator NrdR -
  ACI1GX_RS02430 (ACI1GX_02425) lysC 511538..512890 (-) 1353 WP_005597077.1 lysine-sensitive aspartokinase 3 -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34340.51 Da        Isoelectric Point: 9.6890

>NTDB_id=958151 ACI1GX_RS02405 WP_005597088.1 507101..508048(-) (ceuB) [Actinobacillus pleuropneumoniae strain APL2305225E]
MQKLTALNFLFLVLLFLLSISVGVADFQWRDLFTHTEQLELLFISRLPRTLAVVLVGATLGIAGMVLQIVLKNRFIEPSM
IGASQSAAIGILIVSLMFPATPLIMKMSFATLSALIGMGIFMLLLRRLPPHQKLMVPLIGIVFGNIIEAITTFVAYETDS
LQLLSVWFSGDFSGILAGRYELLWLTAGLAVLVYIMAEQLSIAGLGQNISTSLGINYRQMTWFALIVVAMITAVVVVTVG
QIPFIGLVVPNIISRLAGDRLRQNLPSVALLGANLVLLCDIIGRVVNAPYEVPISTIFGICGTVVFLYLLFRGKK

Nucleotide


Download         Length: 948 bp        

>NTDB_id=958151 ACI1GX_RS02405 WP_005597088.1 507101..508048(-) (ceuB) [Actinobacillus pleuropneumoniae strain APL2305225E]
ATGCAAAAACTAACCGCTTTAAATTTTTTATTTCTGGTCTTACTTTTTCTATTGAGTATTTCAGTAGGGGTTGCCGATTT
CCAATGGAGAGATCTTTTCACTCATACCGAACAGCTTGAATTACTTTTTATCAGTCGATTACCCAGAACGCTTGCCGTTG
TACTTGTCGGTGCCACACTTGGTATTGCCGGAATGGTACTTCAAATCGTACTTAAAAATCGTTTTATTGAACCCAGTATG
ATTGGAGCCAGCCAAAGTGCGGCAATCGGTATCTTAATTGTCAGCTTAATGTTTCCTGCCACACCGCTTATTATGAAAAT
GTCCTTTGCAACGTTAAGCGCATTAATCGGTATGGGGATTTTTATGCTGCTGCTTCGTCGATTACCCCCCCATCAAAAGT
TGATGGTTCCGCTCATCGGAATCGTATTCGGTAATATTATTGAGGCCATTACTACTTTCGTCGCATACGAAACCGACTCT
TTACAATTATTATCCGTTTGGTTCTCAGGCGACTTTTCCGGTATCTTAGCAGGGCGTTACGAATTATTATGGCTAACAGC
CGGGCTGGCCGTCCTTGTATATATTATGGCGGAACAACTCAGCATTGCCGGATTAGGTCAAAATATCAGTACCAGTTTAG
GTATCAATTACCGCCAAATGACTTGGTTTGCGTTAATTGTGGTTGCAATGATTACCGCGGTGGTTGTAGTTACGGTCGGA
CAAATTCCGTTTATCGGATTAGTTGTACCTAATATCATTTCTCGTTTAGCCGGTGACCGTTTACGCCAGAATTTACCTTC
AGTAGCATTACTCGGCGCGAACTTAGTCTTACTTTGTGACATTATCGGACGTGTGGTCAATGCGCCTTATGAAGTACCTA
TCTCGACCATCTTCGGGATTTGCGGAACGGTTGTTTTTCTCTATTTACTGTTTAGAGGGAAAAAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(12-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.342

100

0.375