Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   AABA07_RS02595 Genome accession   NZ_AP028608
Coordinates   518774..519040 (+) Length   88 a.a.
NCBI ID   WP_001810535.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 513774..524040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA07_RS02575 (TKY120829_05120) - 514029..514538 (+) 510 WP_000619950.1 N-acetyltransferase -
  AABA07_RS02580 (TKY120829_05130) pheT 514615..517020 (+) 2406 WP_000961501.1 phenylalanine--tRNA ligase subunit beta -
  AABA07_RS02585 (TKY120829_05140) - 517088..518089 (-) 1002 WP_000597986.1 endonuclease/exonuclease/phosphatase family protein -
  AABA07_RS02590 - 518245..518648 (+) 404 Protein_509 helix-turn-helix domain-containing protein -
  AABA07_RS02595 (TKY120829_05160) HI0659 518774..519040 (+) 267 WP_001810535.1 helix-turn-helix transcriptional regulator Machinery gene
  AABA07_RS02600 (TKY120829_05170) metE 519301..521550 (+) 2250 WP_000108188.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  AABA07_RS02605 (TKY120829_05180) metF 521614..522480 (+) 867 WP_338172874.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9608.13 Da        Isoelectric Point: 4.4893

>NTDB_id=95815 AABA07_RS02595 WP_001810535.1 518774..519040(+) (HI0659) [Streptococcus pneumoniae strain Sep3]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=95815 AABA07_RS02595 WP_001810535.1 518774..519040(+) (HI0659) [Streptococcus pneumoniae strain Sep3]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAGTC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.74

87.5

0.523

Multiple sequence alignment