Detailed information NTG0958126

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ACIX90_RS09195
• Genome accession: NZ_CP173319
• Coordinates: 1942868..1943857 (+)
• Length: 329 a.a.
• NCBI ID: WP_012478568.1
• Uniprot ID: -
• Organism: Actinobacillus pleuropneumoniae strain APL2401251E
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1937868..1948857

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIX90_RS09175 (ACIX90_09175)	-	1938459..1939427 (-)	969	WP_005605665.1	mannose/fructose/sorbose PTS transporter subunit IIA	-
ACIX90_RS09180 (ACIX90_09180)	-	1939618..1940967 (-)	1350	WP_005618129.1	GntP family permease	-
ACIX90_RS09185 (ACIX90_09185)	-	1941145..1941660 (+)	516	WP_005599100.1	gluconokinase	-
ACIX90_RS09190 (ACIX90_09190)	gntR	1941732..1942730 (-)	999	WP_039709359.1	gluconate operon transcriptional repressor GntR	-
ACIX90_RS09195 (ACIX90_09195)	cytR	1942868..1943857 (+)	990	WP_012478568.1	substrate-binding domain-containing protein	Regulator
ACIX90_RS09200 (ACIX90_09200)	rbsD	1943978..1944397 (+)	420	WP_005602428.1	D-ribose pyranase	-
ACIX90_RS09205 (ACIX90_09205)	rbsA	1944410..1945891 (+)	1482	WP_005605674.1	ribose ABC transporter ATP-binding protein RbsA	-
ACIX90_RS09210 (ACIX90_09210)	rbsC	1945944..1946903 (+)	960	WP_404811005.1	ribose ABC transporter permease	-
ACIX90_RS09215 (ACIX90_09215)	rbsB	1946927..1947799 (+)	873	WP_005599112.1	ribose ABC transporter substrate-binding protein RbsB	-
ACIX90_RS09220 (ACIX90_09220)	rbsK	1947872..1948783 (+)	912	WP_404811006.1	ribokinase	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 36918.24 Da
• Isoelectric Point: 6.7245

>NTDB_id=958126 ACIX90_RS09195 WP_012478568.1 1942868..1943857(+) (cytR) [Actinobacillus pleuropneumoniae strain APL2401251E]
MATMKDIARIAGVSTSTVSHVINNSRFVSDEIRQRIEKVVAELNYTPSLVARSLKVKETNTIGMLVTTSSNPFFAEVVRH
VERYCERHNYHLILVNTDGNSTNLAQHLARLLRKQVDGLLLMCSEPQDLDESVMANIHLPMVVIDWWQQALKADNVHENS
ELGGYLATKALIDAGYTEIAVITGEQSKSHTLNRLQGYKRAILEANLPIRPEWIVEGHFDYQAGLEYASRLLALNSRPQA
IFAMSDSIAIGVYQAAWQAGLRIPQDIAVIGYDNIELAQYLSPPLSTIHQPKARLAKNAVEQLIARIHQPDKAYQEIELT
PELVVRRSF

Nucleotide

• Length: 990 bp

>NTDB_id=958126 ACIX90_RS09195 WP_012478568.1 1942868..1943857(+) (cytR) [Actinobacillus pleuropneumoniae strain APL2401251E]
ATGGCAACAATGAAAGATATAGCTCGGATTGCGGGCGTTTCAACTTCCACCGTTTCCCATGTGATCAATAACTCACGTTT
TGTGAGTGACGAAATTCGTCAGCGGATTGAAAAAGTGGTGGCGGAACTCAATTACACGCCTTCGTTAGTCGCTCGCAGTC
TGAAAGTGAAAGAAACCAATACGATCGGTATGTTGGTAACCACCAGTAGTAACCCGTTTTTTGCGGAAGTAGTACGTCAC
GTCGAACGTTATTGTGAACGCCATAACTATCATTTAATTTTAGTGAATACTGACGGTAACAGTACCAATTTAGCACAACA
TTTAGCCCGCTTGTTACGCAAACAAGTGGACGGTTTATTATTAATGTGTTCCGAGCCACAAGATTTGGACGAAAGTGTGA
TGGCGAATATTCACTTGCCAATGGTGGTAATTGACTGGTGGCAACAGGCATTGAAAGCGGATAACGTACACGAAAATTCG
GAATTAGGTGGTTATCTTGCAACAAAAGCGTTAATTGATGCCGGTTATACCGAGATTGCAGTAATTACCGGTGAGCAATC
GAAATCGCATACATTAAACCGTTTACAAGGTTACAAGCGGGCGATTCTAGAGGCAAATTTGCCAATTCGTCCGGAATGGA
TTGTGGAAGGTCACTTCGATTATCAAGCCGGTTTGGAATATGCAAGCCGGTTATTGGCACTAAACTCTCGCCCGCAAGCG
ATTTTTGCGATGAGCGATAGCATTGCAATCGGTGTATATCAAGCCGCTTGGCAAGCCGGTTTACGTATTCCGCAAGATAT
TGCGGTGATCGGTTACGATAATATCGAATTGGCACAATATCTCTCTCCTCCGCTTTCTACGATTCATCAACCCAAAGCCC
GTTTGGCGAAGAATGCGGTGGAGCAGTTGATCGCCCGTATTCATCAGCCGGATAAAGCTTATCAAGAAATCGAACTTACT
CCCGAACTTGTCGTTCGCCGTTCTTTTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (169-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	36.061	100	0.362