Detailed information NTG0095810

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: AABA07_RS01850
• Genome accession: NZ_AP028608
• Coordinates: 370082..372448 (-)
• Length: 788 a.a.
• NCBI ID: WP_000454474.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain Sep3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 365082..377448

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABA07_RS01820 (TKY120829_03620)	vraR	365430..366062 (+)	633	WP_000698434.1	response regulator transcription factor	Regulator
AABA07_RS01825	-	366138..366832 (+)	695	Protein_356	DNA alkylation repair protein	-
AABA07_RS01830 (TKY120829_03650)	-	366982..367221 (+)	240	WP_000754502.1	hypothetical protein	-
AABA07_RS01835 (TKY120829_03660)	cbpG	367302..367896 (+)	595	Protein_358	choline-binding protein CbpG	-
AABA07_RS01840 (TKY120829_03670)	-	368198..368590 (+)	393	WP_000378119.1	tyrosine-type recombinase/integrase	-
AABA07_RS01845 (TKY120829_03680)	tig	368751..370034 (+)	1284	WP_000116466.1	trigger factor	-
AABA07_RS01850 (TKY120829_03690)	recD/recD2/recDB	370082..372448 (-)	2367	WP_000454474.1	ATP-dependent RecD-like DNA helicase	Machinery gene
AABA07_RS01855	-	372525..372647 (-)	123	WP_001842433.1	hypothetical protein	-
AABA07_RS01860 (TKY120829_03700)	lepB	372727..373341 (-)	615	WP_001048155.1	signal peptidase I	-
AABA07_RS01865 (TKY120829_03710)	rnhC	373353..374225 (-)	873	WP_000146872.1	ribonuclease HIII	-
AABA07_RS01870 (TKY120829_03720)	zapA	374312..374614 (+)	303	WP_000002019.1	cell division protein ZapA	-
AABA07_RS01875 (TKY120829_03730)	-	374611..375159 (+)	549	WP_000624515.1	CvpA family protein	-

Sequence

Protein

• Length: 788 a.a.
• Molecular weight: 88666.55 Da
• Isoelectric Point: 4.5836

>NTDB_id=95810 AABA07_RS01850 WP_000454474.1 370082..372448(-) (recD/recD2/recDB) [Streptococcus pneumoniae strain Sep3]
MEVYFSGTIERIIFENPSNFYRILLLEIDDTDAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYDRA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVDAYGENTIDEILQHPEKLEGIAGLSAKNREAFVSTLRLNYGTEMILAKLANY
GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAEELGIESQAPERFRAGLVHSLFQTCMETGDTYVEA
RDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLIRILEKGKQKSQDLETIQKH
ITTVEQELGIEYDNIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDFRKKNNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLHIPLIPQTRLEKIYRQSKESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGAALRNGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPPQKDQLSFEAPQCHYRKRDKVIHLVNDAEINVFNGDLGAITDLIPGKYTESKQDEI
VIDFDGNEVSYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASRRMLERNLIYTAITRAKSKLILLGELQAFDYATQ
HIGTARKTYLIERFSDLLENVEEKQQAVSETVTSSASEQSYILTEENWDRIPAMIGITDTDLKEIFGK

Nucleotide

• Length: 2367 bp

>NTDB_id=95810 AABA07_RS01850 WP_000454474.1 370082..372448(-) (recD/recD2/recDB) [Streptococcus pneumoniae strain Sep3]
ATGGAAGTTTATTTTTCAGGAACCATTGAACGGATTATTTTTGAAAATCCCAGCAATTTTTATCGCATCCTCCTCCTAGA
AATCGACGATACGGACGCAGAGGATTTTGATGATTTTGAAATCATTGTCACAGGAACCATGGCTGATGTAATTGAGGGCG
AAGACTATACTTTTTGGGGGCAAATTGTCCAGCACTCCAAGTATGGAGAACAACTGCAAATCAGTCGTTATGATCGCGCA
AAACCAACTAGTAAGGGCTTGGTCAAGTACTTTTCAAGTAGCCATTTCAAGGGGATTGGTCTCAAGACAGCTCAGAAAAT
CGTGGATGCCTATGGCGAAAATACCATTGACGAAATTTTGCAACACCCAGAAAAGTTAGAAGGCATCGCAGGACTCTCTG
CCAAAAATCGCGAGGCTTTCGTCTCCACTCTCCGTCTCAACTACGGAACGGAGATGATTTTGGCCAAACTAGCCAACTAC
GGCATTCCCAACAAACTAGCCTTTCAGATTCAAGACTTTTACAAGGAAGAAACCCTTGATGTGGTTGAAAATTATCCCTA
CCAACTGGTTGAGGATATCAAGGGTTTGGGCTTTACCATTGCTGACCAACTAGCTGAGGAACTAGGCATCGAAAGTCAGG
CTCCTGAACGCTTCCGCGCCGGTCTAGTTCACAGTCTTTTTCAGACCTGTATGGAAACAGGGGACACCTATGTTGAAGCA
CGGGATTTGCTGGAACAAACCCTTACTCTCCTTGAGTCTTCCCGTCCCGTGGAACTAGACCCCAGCCAAGTTGCCCAAGA
GCTCTCCTACCTGATCGAAGAAGACAAGGTTCAGCAGATTGATACCAAGATCTTTGACAACAGCCTCTTTTTCGCTGAGG
AAGGTATCCGCAGTCACTTGATTCGTATCCTTGAAAAAGGAAAACAGAAGAGCCAAGATTTAGAAACTATTCAAAAGCAT
ATCACTACTGTCGAGCAAGAACTGGGGATTGAGTATGATAACATTCAAAAACAAGCTATTTGTGACGCTATCCAGAACAA
GGTCTTTATCCTGACAGGTGGGCCTGGTACTGGTAAGACAACTGTTATCAATGGAATCATCGCTGTTTATGCCCTTTTAG
AAGGACTTGACTTCAGGAAGAAAAACAATCTGCCCATTCTTCTTGCTGCTCCAACTGGTCGAGCTGCTCGTCGCATGAAT
GAATTGACAGGTTTGCCTAGCGCGACCATACATCGCCACTTGGGAATGACAGGTGACGATGATACCAGTCATCTGGAAGA
TTACCTAGATGCTGACTTTATCATCGTGGATGAATTCTCTATGGTGGATACTTGGCTGGCCAATCAACTCTTCTCCAATA
TCTCTTCTAACAGTAAGATCCTCATCGTAGGTGACAGTGATCAGCTACCTTCTGTCAGTCCTGGACAGGTTCTAGCGGAT
CTGCTTCATATTCCTTTGATTCCTCAGACTCGCTTGGAAAAAATTTATCGACAAAGCAAAGAATCAACCATCGTCACCCT
AGCTAGTCAGATTCGACAGGGCATCTTGCCAGCTGATTTCACCCAAAAAAAAGCTGACCGTTCCTACTTTGAAATTGCTA
GTGGCCATATTCCTGCCACCATTGAAAAAATCTTAGGTGCCGCCCTCAGAAATGGTATTCCTGCCCGTGATATCCAAGTT
CTGGCTCCTATGTACCGAGGGACGGCAGGGATTGATGCTATCAATCAGCTCATGCAAGACCTGCTCAATCCCCCACAAAA
AGATCAACTCAGTTTTGAAGCTCCTCAGTGCCACTATCGTAAGAGAGACAAGGTCATTCATTTGGTTAACGATGCTGAAA
TCAATGTCTTTAATGGGGATTTAGGAGCTATCACAGACCTGATTCCTGGTAAATACACCGAATCGAAACAAGACGAGATT
GTCATTGATTTTGATGGTAATGAAGTCTCTTACCCCCGTAACGAATGGTACAAGATTCGCTTGGCCTATGCCATGAGTAT
TCATAAGTCTCAGGGAAGTGAGTTCCCAGTTGTCATCCTACCGATTACTAGTGCTAGCCGACGTATGCTGGAGCGAAATC
TCATCTACACAGCCATTACACGTGCCAAAAGCAAACTCATCTTACTAGGCGAATTACAAGCCTTCGACTATGCTACCCAA
CACATCGGAACTGCCCGAAAAACCTATCTGATTGAACGCTTCAGTGATCTACTGGAGAATGTTGAAGAAAAGCAACAAGC
TGTCTCTGAAACAGTCACATCAAGTGCCTCTGAACAATCCTACATCCTAACCGAAGAAAACTGGGACCGCATCCCAGCCA
TGATTGGGATTACAGACACAGACCTCAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (574-644)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (662-709)

• AAA domain (AAA_30) (332-520)

• Helix-hairpin-helix containing domain (HHH_RecD2) (148-237)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	40.885	97.462	0.398