Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACIRXL_RS08240 Genome accession   NZ_CP173236
Coordinates   1655718..1656224 (+) Length   168 a.a.
NCBI ID   WP_410680739.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1650718..1661224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRXL_RS08205 (ACIRXL_08205) surE 1650944..1651684 (-) 741 WP_410680744.1 5'/3'-nucleotidase SurE -
  ACIRXL_RS08210 (ACIRXL_08210) truD 1651693..1652700 (-) 1008 WP_410680742.1 tRNA pseudouridine(13) synthase TruD -
  ACIRXL_RS08215 (ACIRXL_08215) ispF 1652704..1653180 (-) 477 WP_264245663.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACIRXL_RS08220 (ACIRXL_08220) - 1653313..1653690 (-) 378 WP_110479105.1 hypothetical protein -
  ACIRXL_RS08225 (ACIRXL_08225) - 1653833..1654435 (+) 603 WP_017805059.1 beta-phosphoglucomutase family hydrolase -
  ACIRXL_RS08230 (ACIRXL_08230) - 1654436..1655044 (+) 609 WP_035685399.1 sugar O-acetyltransferase -
  ACIRXL_RS08235 (ACIRXL_08235) - 1655037..1655495 (+) 459 WP_410680740.1 YqaA family protein -
  ACIRXL_RS08240 (ACIRXL_08240) luxS 1655718..1656224 (+) 507 WP_410680739.1 S-ribosylhomocysteine lyase Regulator
  ACIRXL_RS08245 (ACIRXL_08245) hemW 1656292..1657446 (-) 1155 WP_410680738.1 radical SAM family heme chaperone HemW -
  ACIRXL_RS08250 (ACIRXL_08250) rdgB 1657446..1658042 (-) 597 WP_017805053.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  ACIRXL_RS08255 (ACIRXL_08255) comE1/comEA 1658180..1658536 (-) 357 WP_035685388.1 ComEA family DNA-binding protein Machinery gene
  ACIRXL_RS08260 (ACIRXL_08260) - 1658798..1660111 (-) 1314 WP_410680737.1 NCS2 family permease -
  ACIRXL_RS08265 (ACIRXL_08265) - 1660142..1660282 (+) 141 WP_156127777.1 hypothetical protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19108.98 Da        Isoelectric Point: 5.5568

>NTDB_id=957780 ACIRXL_RS08240 WP_410680739.1 1655718..1656224(+) (luxS) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1]
MPLLDSFKVDHTKMNAPAVRVAKIMRTPKGDDITIFDLRFCIPNKEILPPKGIHTLEHLFAGFMRDHLNSEQVEIIDISP
MGCRTGFYMSLIGRPNEQQVVTAWLAAMKDILQVQNQNDIPELNEYQCGTYTEHSLDEAHQIARNILARGIGVNRNDDLL
LDERLLAQ

Nucleotide


Download         Length: 507 bp        

>NTDB_id=957780 ACIRXL_RS08240 WP_410680739.1 1655718..1656224(+) (luxS) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1]
ATGCCGTTACTTGATAGTTTTAAAGTTGATCATACGAAGATGAATGCTCCCGCCGTGCGTGTTGCAAAAATAATGCGTAC
ACCAAAAGGTGATGACATTACCATTTTCGATTTACGTTTTTGTATTCCAAATAAAGAAATTTTACCGCCGAAAGGGATTC
ATACTCTTGAACATCTTTTTGCAGGTTTTATGCGGGATCACTTGAATAGTGAGCAAGTTGAGATTATTGACATTTCTCCA
ATGGGTTGCCGTACAGGGTTTTATATGTCATTAATTGGTAGACCGAATGAGCAACAAGTCGTAACGGCTTGGCTTGCGGC
AATGAAAGATATTCTACAAGTGCAAAATCAAAATGATATTCCTGAATTAAATGAATACCAATGTGGCACTTATACAGAGC
ATTCCTTAGATGAAGCTCATCAGATTGCACGCAATATTCTTGCTCGTGGTATTGGTGTGAATAGAAATGACGATTTATTG
TTAGATGAGCGTTTGCTTGCACAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.096

98.81

0.732