Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACIRXM_RS10585 Genome accession   NZ_CP173234
Coordinates   2160370..2161743 (-) Length   457 a.a.
NCBI ID   WP_410686388.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2155370..2166743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRXM_RS10580 (ACIRXM_10585) - 2156423..2160289 (-) 3867 WP_410686386.1 S6 family peptidase -
  ACIRXM_RS10585 (ACIRXM_10590) radA/sms 2160370..2161743 (-) 1374 WP_410686388.1 DNA repair protein RadA Machinery gene
  ACIRXM_RS10590 (ACIRXM_10595) - 2161736..2162827 (-) 1092 WP_410686390.1 inorganic triphosphatase -
  ACIRXM_RS10595 (ACIRXM_10600) - 2162984..2163664 (+) 681 WP_410686392.1 TIGR00153 family protein -
  ACIRXM_RS10600 (ACIRXM_10605) - 2163694..2164956 (+) 1263 WP_035685767.1 inorganic phosphate transporter -
  ACIRXM_RS10605 (ACIRXM_10610) can 2165026..2165724 (+) 699 WP_017805734.1 carbonate dehydratase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49530.16 Da        Isoelectric Point: 8.1192

>NTDB_id=957736 ACIRXM_RS10585 WP_410686388.1 2160370..2161743(-) (radA/sms) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
MAKAKTAYVCSDCGAEYVRWQGQCNACKSWNTITEVRLAPTKSSRADRFSGYAGETQAKIQTLADISLQEVPRFHSGFYE
LDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLAQNMTALYVTGEESLQQVAMRANRLGLPTDRLNMLSETSVEQIC
HLADQLKPQIIVVDSIQVMHLADIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDCSLLL
EGEADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRGEEDTAGSSVMVLWEGTRPLLVEIQALVDHSML
ANPRRVAVGLEQNRLALLLAVLHRHGGLQMSDQDVFVNVVGGVKVSETSADLALLLALISSFRNRPLPKDLVVFGEVGLA
GEIRPVPSGQERISEAAKHGFTRAIVPFANKPKSAVKNMQVFTVKKLIDALNILDNI

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=957736 ACIRXM_RS10585 WP_410686388.1 2160370..2161743(-) (radA/sms) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
ATGGCTAAAGCGAAAACCGCCTATGTGTGTAGCGATTGCGGTGCGGAATATGTCCGTTGGCAAGGGCAGTGTAACGCCTG
TAAATCTTGGAATACGATTACGGAAGTACGTCTTGCCCCTACTAAATCAAGCCGTGCTGATCGTTTTAGCGGTTATGCGG
GGGAAACGCAGGCGAAAATTCAAACCCTCGCCGACATCAGTTTGCAAGAAGTGCCACGTTTTCACAGTGGGTTTTATGAG
CTTGATCGTGTATTAGGCGGGGGGATCGTGCCGGGCAGTGCCATTTTAATCGGCGGACACCCTGGGGCGGGGAAAAGTAC
CCTGTTATTGCAAGTGATGTGTGGTTTGGCTCAAAATATGACTGCACTTTATGTTACGGGCGAGGAATCCTTGCAGCAGG
TGGCAATGCGCGCCAATCGTCTTGGGTTGCCAACAGATCGGCTGAATATGTTGTCGGAAACGTCCGTAGAGCAAATTTGC
CATTTGGCCGATCAGCTTAAGCCACAAATCATCGTGGTGGATTCTATTCAAGTGATGCACCTTGCGGATATTCAATCTTC
ACCAGGGAGCGTTTCCCAAGTGCGGGAATGTGCCTCTTTTCTGACCCGTTATGCGAAAACTCGCCAAGTCGCCATTATTA
TGGTGGGACACGTGACCAAAGACGGCACGCTGGCAGGACCTAAGGTGTTGGAACACGCCATTGACTGCTCGCTATTATTA
GAAGGGGAGGCGGACAGCCGTTTCCGCACATTGCGTAGCCATAAAAACCGTTTTGGCGCGGTCAATGAACTCGGCGTATT
TGCGATGACAGAGCAAGGCTTGCGCGAAGTGAAAAATCCTTCCGCCATATTCTTAAGCCGTGGCGAAGAAGACACTGCAG
GCAGTTCCGTAATGGTGCTATGGGAAGGCACGCGCCCGTTGTTGGTGGAAATTCAAGCCTTGGTGGATCATTCAATGCTC
GCCAATCCAAGACGGGTCGCGGTGGGCTTGGAACAAAATCGTTTGGCTTTATTATTAGCCGTATTGCACCGCCACGGTGG
CTTGCAAATGTCCGATCAAGATGTTTTCGTGAATGTGGTAGGCGGCGTGAAAGTGAGCGAAACCAGCGCCGATCTTGCCT
TATTACTGGCGCTGATTTCCAGTTTCCGCAATCGCCCATTGCCAAAAGATCTGGTGGTGTTCGGTGAAGTGGGATTAGCA
GGGGAAATCCGCCCCGTACCAAGCGGACAAGAACGAATTTCTGAAGCAGCCAAACACGGCTTCACCCGTGCTATCGTCCC
GTTTGCCAATAAACCGAAAAGTGCGGTCAAAAATATGCAGGTTTTTACCGTGAAAAAATTGATTGATGCGTTAAATATTT
TAGATAACATATAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-430)

AAA domain (AAA_25)

(84-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.943

100

0.47
  radA Streptococcus mitis NCTC 12261

44.496

93.435

0.416
  radA Streptococcus mitis SK321

44.496

93.435

0.416
  radA Streptococcus pneumoniae Rx1

44.496

93.435

0.416
  radA Streptococcus pneumoniae D39

44.496

93.435

0.416
  radA Streptococcus pneumoniae R6

44.496

93.435

0.416
  radA Streptococcus pneumoniae TIGR4

44.496

93.435

0.416