Detailed information NTG0957728

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ACIRXM_RS08995
• Genome accession: NZ_CP173234
• Coordinates: 1795329..1796327 (+)
• Length: 332 a.a.
• NCBI ID: WP_410686068.1
• Uniprot ID: -
• Organism: Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1790329..1801327

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIRXM_RS08970 (ACIRXM_08975)	rbsD	1790400..1790819 (+)	420	WP_410686060.1	D-ribose pyranase	-
ACIRXM_RS08975 (ACIRXM_08980)	rbsA	1790829..1792316 (+)	1488	WP_410686062.1	ribose ABC transporter ATP-binding protein RbsA	-
ACIRXM_RS08980 (ACIRXM_08985)	rbsC	1792328..1793284 (+)	957	WP_410686064.1	ribose ABC transporter permease	-
ACIRXM_RS08985 (ACIRXM_08990)	rbsB	1793315..1794193 (+)	879	WP_130231042.1	ribose ABC transporter substrate-binding protein RbsB	-
ACIRXM_RS08990 (ACIRXM_08995)	rbsK	1794362..1795288 (+)	927	WP_410686066.1	ribokinase	-
ACIRXM_RS08995 (ACIRXM_09000)	cytR	1795329..1796327 (+)	999	WP_410686068.1	substrate-binding domain-containing protein	Regulator
ACIRXM_RS09000 (ACIRXM_09005)	-	1796421..1797962 (+)	1542	WP_410686070.1	AbgT family transporter	-
ACIRXM_RS09005 (ACIRXM_09010)	pepT	1797981..1799201 (+)	1221	WP_410686072.1	peptidase T	-
ACIRXM_RS09010 (ACIRXM_09015)	ettA	1799510..1801180 (-)	1671	WP_410686074.1	energy-dependent translational throttle protein EttA	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37323.10 Da
• Isoelectric Point: 7.7923

>NTDB_id=957728 ACIRXM_RS08995 WP_410686068.1 1795329..1796327(+) (cytR) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
MATMKDIARIAQVSTSTVSHVINNTGYVSEAMRERIMKVVKELNYRPSALARSLKIKQTKTLGMLVTATNNPFFAEVVSG
VEQYCNQHDYNLIISSLDGNEERLEQNIQTLIQKQVDGLLLMYSDSRHSFLKQLDVALPMVIMDWWPTALSADKIYENSE
LGAYLATKCLIEQGHKAIAIITGNLNKSLAQNRLQGYKKALNEHQLAIRDEWIIESHFDFEGGVEGMKKLLQAGKRPTAV
FACSDTIAVGVYQVAWQNGLRIPQDLSVIGYDDITLAQYLAPPLTTIHQPKAELGKLAVETLLERIKTPHKSEQSILLEP
KLIWRDSVQCRK

Nucleotide

• Length: 999 bp

>NTDB_id=957728 ACIRXM_RS08995 WP_410686068.1 1795329..1796327(+) (cytR) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
ATGGCAACAATGAAAGACATCGCACGCATTGCGCAGGTTTCAACCTCCACCGTGTCGCACGTGATTAATAATACGGGCTA
TGTTAGCGAAGCAATGCGAGAACGCATAATGAAAGTTGTCAAAGAGCTTAATTATCGTCCTTCCGCCTTGGCAAGAAGTT
TAAAAATCAAGCAAACCAAAACCTTAGGTATGCTGGTTACCGCAACCAACAACCCTTTTTTCGCAGAAGTGGTGAGTGGC
GTTGAGCAATATTGTAATCAGCACGATTATAATCTGATTATTTCAAGCCTAGATGGCAATGAAGAACGCTTAGAACAAAA
TATTCAAACGCTGATTCAAAAACAGGTGGACGGTTTGTTGTTAATGTATTCTGATAGTCGTCATTCCTTTCTTAAACAAC
TTGATGTTGCCTTGCCAATGGTGATTATGGACTGGTGGCCAACGGCATTAAGTGCGGATAAAATTTATGAAAATTCTGAA
CTTGGTGCGTATCTTGCGACAAAATGCTTAATTGAGCAAGGGCATAAAGCGATTGCGATTATCACCGGAAATCTGAATAA
ATCCCTCGCACAAAATCGTTTACAAGGCTATAAAAAAGCCTTAAACGAACATCAGTTAGCCATTCGTGATGAATGGATTA
TCGAAAGCCATTTTGATTTTGAAGGTGGCGTGGAAGGAATGAAAAAACTATTACAAGCTGGCAAACGGCCTACGGCTGTG
TTTGCGTGTAGCGACACGATTGCAGTGGGCGTTTATCAAGTGGCGTGGCAAAATGGTTTGCGTATTCCGCAAGATCTTTC
TGTGATTGGCTATGATGATATTACCCTTGCTCAATATCTCGCCCCACCGCTCACCACCATTCATCAACCTAAAGCAGAAT
TAGGCAAACTTGCGGTGGAAACGCTGTTAGAACGTATTAAAACCCCCCATAAAAGCGAACAATCTATTTTGCTAGAACCT
AAATTAATTTGGCGGGATTCTGTGCAGTGCAGAAAATAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (170-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	38.298	99.096	0.38
cytR	Vibrio parahaemolyticus RIMD 2210633	37.805	98.795	0.373