Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACIRXM_RS05305 Genome accession   NZ_CP173234
Coordinates   1032279..1033772 (+) Length   497 a.a.
NCBI ID   WP_410687625.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1027279..1038772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRXM_RS05285 (ACIRXM_05290) - 1028528..1029697 (+) 1170 WP_410687623.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  ACIRXM_RS05290 (ACIRXM_05295) pilF/pilF2 1029731..1030273 (+) 543 WP_046097864.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  ACIRXM_RS05295 (ACIRXM_05300) dprA 1030418..1031518 (+) 1101 WP_035687998.1 DNA-processing protein DprA Machinery gene
  ACIRXM_RS05300 (ACIRXM_05305) rsmD 1031515..1032123 (-) 609 WP_410687624.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACIRXM_RS05305 (ACIRXM_05310) pilA 1032279..1033772 (+) 1494 WP_410687625.1 signal recognition particle-docking protein FtsY Machinery gene
  ACIRXM_RS05310 (ACIRXM_05315) - 1033986..1034126 (+) 141 WP_410687626.1 hypothetical protein -
  ACIRXM_RS05315 (ACIRXM_05320) glpQ 1034318..1035412 (-) 1095 WP_410687627.1 glycerophosphodiester phosphodiesterase -
  ACIRXM_RS05320 (ACIRXM_05325) glpT 1035506..1036951 (-) 1446 WP_046097260.1 glycerol-3-phosphate transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 54792.17 Da        Isoelectric Point: 4.1684

>NTDB_id=957716 ACIRXM_RS05305 WP_410687625.1 1032279..1033772(+) (pilA) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
MAEKNKKGGFWSWFGLGKKEEEAVEPSLLQENAEEINVSQTEIPSEQGAVENPQDFVQETESVTQTEITAEQSAVENSQG
FEQETETLTQAEISSEQSAVENPQGFEQETETLTQAEISSEQSAVENPQDFEQETESLTQIEITPEQSAVENPQDFEQET
ESLTQTDITPEQSEAENLQSAEQEKPSKGGFFSRLVKGLIRTKQNIGSGFLSLFSGKKIDDDLFEELEEQLLIADIGMPT
TTKIINNLTQHASRKQLKEADLLYQQLKAELADIIKPVAQPLQIDSSKKPYVILMVGVNGVGKTTTIGKLARQFQMQGKS
VMLAAGDTFRAAAVEQLQVWGERNHIPVIAQNTGADSASVIYDAMQSAAARNIDILIADTAGRLQNKNNLMDELKKIVRV
MKKYDETAPHEIMLTLDAGTGQNAISQAKLFHEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGIGEKIEDLRPF
QAEEFIEALFSKELETQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=957716 ACIRXM_RS05305 WP_410687625.1 1032279..1033772(+) (pilA) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
ATGGCAGAAAAAAATAAAAAAGGCGGATTTTGGTCTTGGTTTGGCTTAGGTAAAAAGGAAGAAGAAGCGGTAGAGCCTAG
TTTATTGCAAGAAAATGCGGAAGAAATCAACGTTTCACAAACAGAAATCCCCTCAGAACAAGGTGCGGTGGAAAATCCGC
AAGATTTTGTGCAAGAAACGGAAAGTGTAACGCAAACTGAAATCACAGCAGAGCAAAGTGCGGTGGAAAATTCACAAGGT
TTTGAGCAAGAAACGGAAACTTTAACGCAAGCTGAAATTTCCTCAGAGCAAAGTGCGGTAGAAAACCCGCAAGGTTTTGA
GCAAGAAACGGAAACTCTAACGCAAGCTGAAATTTCCTCAGAGCAAAGTGCGGTAGAAAATCCGCAAGATTTTGAGCAAG
AAACGGAAAGCCTAACGCAAATCGAAATCACGCCAGAGCAAAGTGCGGTGGAAAATCCGCAAGATTTTGAGCAAGAAACG
GAAAGCCTAACGCAAACCGACATCACGCCAGAGCAAAGTGAAGCAGAAAATCTACAATCTGCAGAACAAGAAAAACCAAG
TAAAGGGGGCTTTTTCAGTCGATTAGTGAAAGGGCTAATTCGCACAAAACAGAATATCGGTTCGGGCTTTTTGAGCTTAT
TTTCAGGTAAGAAAATTGATGATGATCTTTTTGAAGAGCTGGAAGAACAGTTATTGATCGCCGATATTGGAATGCCGACC
ACAACGAAAATTATTAATAATTTAACTCAACACGCCAGTCGCAAACAGCTAAAAGAGGCAGATTTGTTGTATCAACAGCT
TAAAGCGGAGCTTGCGGACATTATCAAACCCGTTGCACAGCCGCTGCAAATTGATAGCAGCAAAAAGCCTTATGTGATTT
TGATGGTGGGCGTAAATGGCGTGGGCAAAACTACCACCATTGGCAAACTTGCACGTCAATTCCAAATGCAAGGGAAATCC
GTGATGTTGGCAGCAGGGGATACTTTCCGTGCCGCCGCCGTAGAACAGCTACAAGTGTGGGGGGAACGCAATCATATTCC
CGTTATCGCTCAAAACACGGGGGCGGATTCTGCTTCCGTGATTTATGACGCAATGCAATCAGCCGCGGCGAGAAATATTG
ACATTTTAATCGCCGATACCGCAGGGCGTTTGCAAAATAAAAATAACTTAATGGACGAGCTGAAAAAAATCGTGCGAGTG
ATGAAAAAATACGATGAAACCGCACCGCACGAAATTATGCTGACCCTTGACGCGGGTACAGGGCAAAACGCCATCAGCCA
AGCGAAATTATTCCACGAAGCCGTAGGGCTAACGGGGATTAGCTTAACGAAACTTGACGGCACGGCAAAAGGCGGGGTGA
TTTTCGCTATCGCAGATCAATTTAAATTGCCGATTCGCTATATTGGTATCGGTGAAAAAATTGAAGACCTCCGCCCATTC
CAAGCGGAAGAATTTATTGAGGCTTTATTTAGTAAAGAATTGGAAACTCAATAG

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(207-271)

SRP54-type protein, GTPase domain (SRP54)

(291-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

43.614

83.501

0.364