Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACIO08_RS01100 Genome accession   NZ_CP173233
Coordinates   251324..252322 (-) Length   332 a.a.
NCBI ID   WP_410678576.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 246324..257322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO08_RS01085 (ACIO08_01085) ettA 246470..248140 (+) 1671 WP_410678573.1 energy-dependent translational throttle protein EttA -
  ACIO08_RS01090 (ACIO08_01090) pepT 248451..249671 (-) 1221 WP_410678574.1 peptidase T -
  ACIO08_RS01095 (ACIO08_01095) - 249690..251231 (-) 1542 WP_410678575.1 AbgT family transporter -
  ACIO08_RS01100 (ACIO08_01100) cytR 251324..252322 (-) 999 WP_410678576.1 substrate-binding domain-containing protein Regulator
  ACIO08_RS01105 (ACIO08_01105) rbsK 252362..253288 (-) 927 WP_410678578.1 ribokinase -
  ACIO08_RS01110 (ACIO08_01110) rbsB 253457..254335 (-) 879 WP_130231042.1 ribose ABC transporter substrate-binding protein RbsB -
  ACIO08_RS01115 (ACIO08_01115) rbsC 254366..255322 (-) 957 WP_410678579.1 ribose ABC transporter permease -
  ACIO08_RS01120 (ACIO08_01120) rbsA 255334..256821 (-) 1488 WP_410678581.1 ribose ABC transporter ATP-binding protein RbsA -
  ACIO08_RS01125 (ACIO08_01125) rbsD 256831..257250 (-) 420 WP_410678582.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37322.07 Da        Isoelectric Point: 7.7923

>NTDB_id=957643 ACIO08_RS01100 WP_410678576.1 251324..252322(-) (cytR) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2]
MATMKDIARIAQVSTSTVSHVINNTGYVSDAMRERIMKVVKELNYRPSALARSLKIKQTKTLGMLVTATNNPFFAEVVSG
VEQYCNQHDYNLIISSLDGNEERLEQNIQTLIQKQVDGLLLMYSDSRHSFLKQLDVALPMVIMDWWPTALSADKIYENSE
LGAYLATKCLIEQGHKAIAIITGNLNKSLAQNRLQGYKKALNEHQLAIRDEWIIESHFDFEGGVEGMKKLLQAGKRPTAV
FACSDTIAVGVYQVAWQNGLRIPQDLSVIGYDDITLAQYLAPPLTTIHQPKAELGKLAVETLLERIKNPHKSEQSILLEP
KLIWRDSVQCRK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=957643 ACIO08_RS01100 WP_410678576.1 251324..252322(-) (cytR) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2]
ATGGCAACAATGAAAGATATTGCACGCATTGCACAGGTTTCAACCTCCACCGTGTCGCACGTGATTAATAACACGGGCTA
TGTGAGCGATGCAATGCGAGAACGCATAATGAAGGTTGTCAAAGAACTGAATTATCGCCCTTCCGCCTTGGCGAGAAGTT
TAAAAATTAAGCAAACCAAAACCTTGGGAATGTTGGTTACCGCAACCAACAACCCTTTTTTTGCGGAAGTGGTGAGTGGC
GTTGAGCAGTATTGTAATCAGCACGATTATAATCTGATTATTTCAAGCCTAGATGGCAATGAAGAACGCTTAGAACAAAA
TATTCAAACGCTGATTCAAAAACAGGTGGACGGCTTGTTGTTAATGTATTCTGATAGCCGTCATTCCTTTCTTAAACAAC
TTGATGTTGCCTTGCCAATGGTGATTATGGACTGGTGGCCAACGGCATTAAGTGCGGATAAAATTTATGAAAATTCTGAA
CTTGGTGCATATCTTGCGACAAAATGCTTAATTGAGCAAGGGCATAAAGCGATTGCGATTATCACCGGAAATCTGAATAA
ATCCCTCGCACAAAATCGTTTGCAAGGCTATAAAAAAGCCTTAAACGAACATCAGTTAGCCATTCGTGATGAATGGATTA
TCGAAAGCCATTTTGATTTTGAAGGTGGCGTGGAAGGAATGAAAAAGCTGTTACAAGCGGGCAAACGGCCTACGGCTGTG
TTTGCGTGTAGCGACACGATTGCAGTAGGCGTTTATCAAGTGGCGTGGCAAAATGGTTTGCGTATTCCGCAAGATCTTTC
TGTGATTGGCTATGATGATATTACCCTTGCCCAATATCTCGCCCCACCGCTCACCACCATTCACCAACCTAAAGCTGAAT
TAGGCAAACTTGCGGTGGAAACGCTGTTAGAACGCATTAAAAACCCCCATAAAAGTGAACAATCTATTTTGCTAGAACCT
AAATTAATTTGGCGGGATTCTGTGCAGTGCAGAAAATAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.298

99.096

0.38
  cytR Vibrio parahaemolyticus RIMD 2210633

37.805

98.795

0.373