Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACIO05_RS07235 Genome accession   NZ_CP173232
Coordinates   1468071..1469072 (+) Length   333 a.a.
NCBI ID   WP_264255354.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1463071..1474072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO05_RS07220 (ACIO05_07220) - 1464525..1465460 (-) 936 WP_264255356.1 nucleoside hydrolase -
  ACIO05_RS07225 (ACIO05_07225) - 1465758..1467023 (+) 1266 WP_035684956.1 NupC/NupG family nucleoside CNT transporter -
  ACIO05_RS07230 (ACIO05_07230) rbsK 1467105..1468031 (+) 927 WP_264255355.1 ribokinase -
  ACIO05_RS07235 (ACIO05_07235) cytR 1468071..1469072 (+) 1002 WP_264255354.1 substrate-binding domain-containing protein Regulator
  ACIO05_RS07240 (ACIO05_07240) - 1469166..1470707 (+) 1542 WP_264255353.1 AbgT family transporter -
  ACIO05_RS07245 (ACIO05_07245) pepT 1470726..1471946 (+) 1221 WP_410678574.1 peptidase T -
  ACIO05_RS07250 (ACIO05_07250) ettA 1472257..1473927 (-) 1671 WP_410678573.1 energy-dependent translational throttle protein EttA -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37519.29 Da        Isoelectric Point: 7.8579

>NTDB_id=957613 ACIO05_RS07235 WP_264255354.1 1468071..1469072(+) (cytR) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3]
MATMKDIARIAQVSTSTVSHVINNTGYVSDAMRERIMKVVKELNYRPSALARSLKIKQTKTLGMLVTATNNPFFAEVVSG
VEQYCNQHDYNLIISSLDGNEDRLEQNIQTLIQKQVDGLLLMYSDSRHSFLKQLDVALPMVIMDWWPTALSADKIYENSE
LGAYLATKCLIEQGHKEIAIITGNLNKSLAQNRLQGYKKALNEHQLAIRDEWIIESHFDFEGGVEGMKKLLQAGKRPTAV
FACSDTIAVGVYQVAWQNGLRIPQDLSVIGYDDITLSQYLAPPLTTIHQPKAELGKLAVETLLERIKNPHKSEQSILLEP
KLIWRDSVRVLRK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=957613 ACIO05_RS07235 WP_264255354.1 1468071..1469072(+) (cytR) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3]
ATGGCAACAATGAAAGATATTGCACGCATCGCACAGGTTTCAACCTCCACCGTGTCGCACGTGATTAATAACACGGGCTA
TGTGAGCGATGCAATGCGAGAACGCATAATGAAGGTTGTCAAAGAACTGAATTATCGCCCTTCCGCCTTGGCGAGAAGCC
TGAAAATCAAGCAAACTAAAACCTTGGGAATGTTGGTTACTGCAACCAACAACCCTTTTTTTGCGGAAGTGGTGAGTGGC
GTTGAGCAGTATTGTAATCAGCACGATTATAATCTGATTATTTCAAGTCTAGATGGCAATGAAGATCGCTTAGAGCAAAA
TATTCAAACGCTGATTCAAAAACAGGTGGACGGCTTGTTGTTAATGTATTCTGATAGCCGTCATTCCTTTCTTAAACAAC
TTGATGTTGCCTTACCAATGGTGATTATGGACTGGTGGCCAACGGCATTAAGTGCGGATAAAATTTATGAAAATTCTGAA
CTTGGTGCGTATCTTGCGACAAAATGCTTAATTGAGCAAGGACATAAAGAGATTGCGATTATCACAGGAAATCTGAATAA
ATCCCTCGCACAAAATCGTTTGCAAGGCTATAAAAAAGCCTTAAACGAACATCAGTTAGCCATTCGTGATGAATGGATTA
TCGAAAGCCATTTTGATTTTGAAGGTGGCGTGGAAGGAATGAAAAAGCTGTTACAAGCGGGCAAACGGCCTACGGCTGTG
TTTGCGTGCAGCGACACGATTGCGGTGGGCGTTTATCAAGTGGCGTGGCAAAATGGTTTGCGTATTCCGCAAGATCTTTC
TGTGATTGGCTATGATGATATTACCCTTTCCCAATATCTCGCCCCACCGCTCACCACCATTCATCAACCTAAAGCCGAAT
TAGGCAAACTTGCTGTGGAAACGCTGCTAGAACGCATTAAAAATCCCCATAAAAGCGAACAATCTATTTTGCTAGAACCT
AAATTAATTTGGCGTGATTCTGTGCGGGTTTTAAGAAAATAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.994

98.799

0.375
  cytR Vibrio parahaemolyticus RIMD 2210633

37.5

98.498

0.369