Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACIO03_RS11270 Genome accession   NZ_CP173231
Coordinates   2350376..2351749 (+) Length   457 a.a.
NCBI ID   WP_410678334.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2345376..2356749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO03_RS11250 (ACIO03_11250) can 2346395..2347093 (-) 699 WP_017805734.1 carbonate dehydratase -
  ACIO03_RS11255 (ACIO03_11255) - 2347163..2348425 (-) 1263 WP_035685767.1 inorganic phosphate transporter -
  ACIO03_RS11260 (ACIO03_11260) - 2348455..2349135 (-) 681 WP_035685763.1 TIGR00153 family protein -
  ACIO03_RS11265 (ACIO03_11265) - 2349292..2350383 (+) 1092 WP_410678333.1 inorganic triphosphatase -
  ACIO03_RS11270 (ACIO03_11270) radA/sms 2350376..2351749 (+) 1374 WP_410678334.1 DNA repair protein RadA Machinery gene
  ACIO03_RS11275 (ACIO03_11275) - 2351829..2355698 (+) 3870 WP_410678335.1 S6 family peptidase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49532.14 Da        Isoelectric Point: 8.1192

>NTDB_id=957582 ACIO03_RS11270 WP_410678334.1 2350376..2351749(+) (radA/sms) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4]
MAKAKTAYVCSDCGAEYVRWQGQCNACKSWNTITEVRLAPAKSSRADRFSGYAGETQAKIQTLADISLQEVPRFHSGFYE
LDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLAQNMTALYVTGEESLQQVAMRANRLGLPTDRLNMLSETSVEQIC
HLADQLKPQIIVVDSIQVMHLSDIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDCSLLL
EGESDSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRGEEDTAGSSVMVLWEGTRPLLVEIQALVDHSML
ANPRRVAVGLEQNRLALLLAVLHRHGGLQMSDQDVFVNVVGGVKVSETSADLALLLALISSFRNRPLPKDLVVFGEVGLA
GEIRPVPSGQERISEAAKHGFTRAIVPFANKPKSAVKNMQVFTVKKLIDALNILDNI

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=957582 ACIO03_RS11270 WP_410678334.1 2350376..2351749(+) (radA/sms) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4]
ATGGCTAAAGCGAAAACCGCCTATGTGTGTAGCGATTGTGGTGCGGAATATGTCCGCTGGCAAGGGCAGTGTAACGCCTG
TAAATCTTGGAATACGATTACGGAAGTGCGTCTTGCCCCTGCTAAATCAAGCCGCGCTGATCGTTTTAGCGGTTATGCGG
GGGAAACGCAGGCGAAAATTCAAACCCTCGCCGACATCAGTTTGCAAGAAGTGCCACGTTTTCACAGTGGGTTTTATGAG
CTTGATCGTGTATTAGGCGGGGGGATCGTGCCGGGCAGTGCCATTTTAATCGGCGGACACCCTGGGGCGGGGAAAAGTAC
CCTGTTATTGCAAGTGATGTGTGGTTTGGCTCAAAATATGACCGCACTTTATGTTACGGGGGAAGAGTCCTTGCAACAGG
TGGCAATGCGTGCCAATCGTCTTGGCTTGCCAACTGATCGTTTAAATATGCTTTCAGAAACCTCCGTAGAGCAAATTTGC
CATTTGGCCGATCAGCTTAAACCACAAATCATCGTGGTGGATTCCATTCAAGTAATGCACCTTTCGGATATTCAATCTTC
ACCTGGGAGCGTTTCCCAAGTGCGGGAATGTGCTTCTTTTTTGACCCGTTATGCGAAAACTCGCCAAGTCGCCATCATTA
TGGTTGGACACGTTACTAAAGACGGCACGCTGGCAGGACCTAAGGTGTTAGAACACGCTATTGACTGCTCGTTATTATTA
GAGGGGGAGTCGGATAGCCGTTTTCGCACCTTGCGTAGCCACAAAAATCGCTTTGGTGCAGTGAATGAATTGGGCGTTTT
TGCGATGACGGAACAGGGCTTGCGCGAAGTGAAAAATCCTTCCGCCATATTCTTAAGCCGTGGGGAAGAAGACACCGCGG
GAAGTTCCGTAATGGTGCTATGGGAAGGCACGCGCCCGTTGTTGGTGGAAATTCAAGCCTTGGTGGATCACTCAATGCTC
GCCAATCCAAGACGGGTGGCAGTGGGCTTGGAGCAAAATCGCCTTGCTTTATTGTTAGCCGTATTGCACCGCCACGGCGG
CTTGCAAATGTCCGATCAAGATGTTTTCGTGAATGTGGTAGGCGGTGTGAAAGTGAGCGAAACCAGCGCCGATCTTGCCT
TATTACTGGCGTTAATTTCCAGTTTCCGCAATCGCCCATTGCCAAAAGATCTGGTGGTGTTCGGCGAAGTGGGATTAGCA
GGGGAAATCCGCCCCGTACCAAGTGGACAAGAACGAATTTCCGAAGCAGCCAAACACGGCTTCACCCGAGCTATCGTACC
GTTTGCCAATAAACCAAAAAGTGCGGTGAAAAATATGCAAGTTTTTACCGTGAAAAAATTGATTGATGCGTTAAATATTT
TAGATAACATATAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-430)

AAA domain (AAA_25)

(84-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.38

100

0.475
  radA Streptococcus mitis NCTC 12261

44.496

93.435

0.416
  radA Streptococcus mitis SK321

44.496

93.435

0.416
  radA Streptococcus pneumoniae Rx1

44.496

93.435

0.416
  radA Streptococcus pneumoniae D39

44.496

93.435

0.416
  radA Streptococcus pneumoniae R6

44.496

93.435

0.416
  radA Streptococcus pneumoniae TIGR4

44.496

93.435

0.416