Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACIO03_RS09535 Genome accession   NZ_CP173231
Coordinates   1958446..1958952 (+) Length   168 a.a.
NCBI ID   WP_410678076.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1953446..1963952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO03_RS09500 (ACIO03_09500) surE 1953672..1954412 (-) 741 WP_264256645.1 5'/3'-nucleotidase SurE -
  ACIO03_RS09505 (ACIO03_09505) truD 1954421..1955428 (-) 1008 WP_264256646.1 tRNA pseudouridine(13) synthase TruD -
  ACIO03_RS09510 (ACIO03_09510) ispF 1955432..1955908 (-) 477 WP_264256649.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACIO03_RS09515 (ACIO03_09515) - 1956041..1956418 (-) 378 WP_017805060.1 hypothetical protein -
  ACIO03_RS09520 (ACIO03_09520) - 1956561..1957163 (+) 603 WP_035685401.1 beta-phosphoglucomutase family hydrolase -
  ACIO03_RS09525 (ACIO03_09525) - 1957164..1957772 (+) 609 WP_017805058.1 sugar O-acetyltransferase -
  ACIO03_RS09530 (ACIO03_09530) - 1957765..1958223 (+) 459 WP_410678075.1 YqaA family protein -
  ACIO03_RS09535 (ACIO03_09535) luxS 1958446..1958952 (+) 507 WP_410678076.1 S-ribosylhomocysteine lyase Regulator
  ACIO03_RS09540 (ACIO03_09540) hemW 1959020..1960174 (-) 1155 WP_410678077.1 radical SAM family heme chaperone HemW -
  ACIO03_RS09545 (ACIO03_09545) rdgB 1960174..1960770 (-) 597 WP_410678079.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  ACIO03_RS09550 (ACIO03_09550) comE1/comEA 1960908..1961264 (-) 357 WP_410678080.1 ComEA family DNA-binding protein Machinery gene
  ACIO03_RS09555 (ACIO03_09555) - 1961527..1962840 (-) 1314 WP_410678081.1 NCS2 family permease -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19095.00 Da        Isoelectric Point: 5.9177

>NTDB_id=957573 ACIO03_RS09535 WP_410678076.1 1958446..1958952(+) (luxS) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4]
MPLLDSFKVDHTKMNAPAVRVAKIMRTPKGDDITIFDLRFCIPNKEILPPKGIHTLEHLFAGFMRDHLNSEQVEIIDISP
MGCRTGFYMSLIGRPNEKQVVTAWLAAMKDILQVQNQNDIPELNEYQCGTYTEHSLDEAHQIARNILARGVGVNRNDDLL
LDERLLAQ

Nucleotide


Download         Length: 507 bp        

>NTDB_id=957573 ACIO03_RS09535 WP_410678076.1 1958446..1958952(+) (luxS) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4]
ATGCCGTTACTTGATAGTTTTAAAGTCGATCATACGAAGATGAATGCTCCCGCCGTGCGTGTTGCAAAAATAATGCGTAC
ACCAAAAGGTGATGACATTACCATTTTCGATTTACGTTTTTGTATTCCAAATAAAGAAATTTTACCGCCGAAAGGGATTC
ATACTCTTGAACATCTTTTTGCAGGTTTTATGCGGGATCACTTGAATAGTGAGCAAGTTGAGATTATTGACATTTCTCCA
ATGGGGTGCCGTACAGGGTTTTATATGTCATTAATTGGTAGACCGAATGAGAAACAAGTCGTAACAGCTTGGCTTGCGGC
AATGAAAGATATTCTACAAGTGCAAAATCAAAATGATATTCCTGAATTAAATGAATACCAATGTGGCACTTATACAGAGC
ATTCCTTAGATGAAGCTCATCAGATTGCACGCAATATTCTTGCTCGTGGTGTTGGTGTGAATAGAAATGACGATTTATTG
TTAGATGAGCGTTTGCTTGCACAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.892

98.81

0.72