Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACIO03_RS04910 Genome accession   NZ_CP173231
Coordinates   1059308..1060801 (-) Length   497 a.a.
NCBI ID   WP_410681550.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1054308..1065801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO03_RS04900 (ACIO03_04900) glpT 1056129..1057574 (+) 1446 WP_046097260.1 glycerol-3-phosphate transporter -
  ACIO03_RS04905 (ACIO03_04905) glpQ 1057668..1058762 (+) 1095 WP_264256084.1 glycerophosphodiester phosphodiesterase -
  ACIO03_RS04910 (ACIO03_04910) pilA 1059308..1060801 (-) 1494 WP_410681550.1 signal recognition particle-docking protein FtsY Machinery gene
  ACIO03_RS04915 (ACIO03_04915) rsmD 1060957..1061565 (+) 609 WP_264245187.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACIO03_RS04920 (ACIO03_04920) dprA 1061562..1062662 (-) 1101 WP_410679125.1 DNA-processing protein DprA Machinery gene
  ACIO03_RS04925 (ACIO03_04925) pilF/pilF2 1062807..1063349 (-) 543 WP_110479719.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  ACIO03_RS04930 (ACIO03_04930) - 1063383..1064552 (-) 1170 WP_410679126.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 54776.30 Da        Isoelectric Point: 4.1994

>NTDB_id=957549 ACIO03_RS04910 WP_410681550.1 1059308..1060801(-) (pilA) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4]
MAEKNKKGGFWSWFGLGKKEEEAVEPSLLQENAEEINVSQTEIPSEQSAVENPQDFAQETESLTQTDITPEQSAVENSQG
FEQETETLTQAEISSEQSAVENPQGFEQETESVTQTDITLEQSAVENPQGFEQETESLTQIDITPEQSAVENPQDFEQET
ESLTQIEITPEQSEAENPQPAEKEKPSKGGFFSRLVKGLIRTKQNIGSGFLSLFSGKKIDDDLFEELEEQLLIADIGMPT
TTKIINNLTQHASRKQLKEADLLYQQLKAELADIIKPVAQPLQIDSSKKPYVILMVGVNGVGKTTTIGKLARQLQMQGKS
VMLAAGDTFRAAAVEQLQVWGERNHIPVIAQNTGADSASVIYDAMQSAAARNIDILIADTAGRLQNKNNLMDELKKIVRV
MKKYDETAPHEIMLTLDAGTGQNAISQAKLFHEAIGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGIGEKIEDLRPF
QAEEFIEALFSKELETQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=957549 ACIO03_RS04910 WP_410681550.1 1059308..1060801(-) (pilA) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4]
ATGGCAGAAAAAAATAAAAAAGGCGGATTTTGGTCTTGGTTTGGCTTAGGTAAAAAGGAAGAGGAAGCGGTAGAGCCTAG
TTTATTGCAAGAAAATGCGGAAGAAATCAACGTTTCACAAACAGAAATCCCCTCAGAACAAAGTGCGGTAGAAAATCCGC
AAGATTTTGCACAAGAAACGGAAAGCCTAACGCAAACCGACATCACGCCAGAGCAAAGTGCGGTGGAAAATTCACAAGGT
TTTGAGCAAGAAACGGAAACTCTAACGCAAGCTGAAATTTCCTCAGAGCAAAGTGCGGTAGAAAATCCGCAAGGTTTTGA
GCAAGAAACGGAAAGCGTAACGCAAACCGATATCACGCTAGAGCAAAGTGCGGTAGAAAATCCGCAAGGTTTTGAGCAAG
AAACGGAAAGCCTAACGCAAATCGACATCACGCCAGAGCAAAGTGCGGTAGAAAACCCGCAAGATTTTGAGCAAGAAACG
GAAAGCCTAACGCAAATCGAAATCACGCCAGAGCAAAGTGAAGCAGAAAATCCACAACCCGCTGAGAAAGAAAAACCAAG
CAAAGGGGGCTTTTTCAGTCGCTTAGTGAAAGGGCTGATTCGTACCAAACAGAATATCGGTTCAGGCTTTTTGAGCCTAT
TTTCAGGTAAGAAAATTGATGATGATTTGTTTGAAGAGCTGGAAGAACAGCTATTGATCGCCGATATTGGAATGCCGACA
ACAACCAAGATTATCAATAATTTAACTCAACACGCCAGCCGCAAACAGCTAAAAGAGGCAGATTTATTGTATCAACAGCT
TAAAGCGGAGCTTGCGGACATTATCAAACCCGTTGCACAGCCGCTGCAAATTGATAGCAGCAAAAAGCCTTATGTGATTT
TGATGGTGGGCGTAAATGGCGTGGGCAAAACTACCACCATTGGCAAACTTGCACGTCAATTACAAATGCAAGGGAAATCC
GTGATGTTGGCAGCAGGGGATACTTTCCGTGCCGCCGCCGTAGAACAGCTACAAGTGTGGGGGGAACGCAATCATATTCC
CGTTATCGCTCAAAACACGGGGGCGGATTCTGCTTCCGTGATTTATGACGCAATGCAATCAGCCGCGGCGAGAAATATTG
ACATTTTAATCGCCGATACCGCAGGGCGTTTGCAAAATAAAAATAACTTAATGGACGAGCTGAAAAAAATCGTGCGAGTG
ATGAAAAAATACGATGAAACCGCACCGCACGAAATTATGCTGACCCTTGACGCGGGTACAGGGCAAAACGCCATTAGCCA
AGCGAAATTATTCCACGAAGCCATAGGGCTAACGGGCATTAGCTTAACGAAGCTCGACGGCACAGCAAAAGGCGGGGTGA
TTTTCGCCATCGCAGATCAATTTAAATTGCCGATTCGCTATATTGGTATCGGTGAAAAAATTGAAGACCTCCGTCCATTC
CAAGCGGAAGAATTTATCGAAGCTTTATTTAGTAAAGAATTGGAAACTCAATAG

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(291-490)

SRP54-type protein, helical bundle domain (SRP54_N)

(207-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

43.437

84.306

0.366