Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACIO06_RS12010 Genome accession   NZ_CP173230
Coordinates   2442215..2443588 (+) Length   457 a.a.
NCBI ID   WP_410680132.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2437215..2448588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO06_RS11990 (ACIO06_11990) can 2438236..2438934 (-) 699 WP_017805734.1 carbonate dehydratase -
  ACIO06_RS11995 (ACIO06_11995) - 2439004..2440266 (-) 1263 WP_410680130.1 inorganic phosphate transporter -
  ACIO06_RS12000 (ACIO06_12000) - 2440295..2440975 (-) 681 WP_035685763.1 TIGR00153 family protein -
  ACIO06_RS12005 (ACIO06_12005) - 2441131..2442222 (+) 1092 WP_410680131.1 inorganic triphosphatase -
  ACIO06_RS12010 (ACIO06_12010) radA/sms 2442215..2443588 (+) 1374 WP_410680132.1 DNA repair protein RadA Machinery gene
  ACIO06_RS12015 (ACIO06_12015) - 2443666..2447574 (+) 3909 WP_410680133.1 S6 family peptidase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49514.16 Da        Isoelectric Point: 8.1192

>NTDB_id=957528 ACIO06_RS12010 WP_410680132.1 2442215..2443588(+) (radA/sms) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2]
MAKAKTAYVCSDCGAEYVRWQGQCNACKSWNTITEVRLAPAKSSRADRFSGYAGETQAKIQTLADISLQEVPRFHSGFYE
LDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLAQNMTALYVTGEESLQQVAMRANRLGLPTDRLNMLSETSVEQIC
HLADQLKPQIIVVDSIQVMHLADIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDCSLLL
EGEADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRGEEETAGSSVMVLWEGTRPLLVEIQALVDHSML
ANPRRVAVGLEQNRLALLLAVLHRHGGLQMSDQDVFVNVVGGVKVSETSADLALLLALISSFRNRPLPKDLVVFGEVGLA
GEIRPVPSGQERISEAAKHGFTRAIVPFANKPKSAVKNMQVFTVKKLIDALNILDNI

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=957528 ACIO06_RS12010 WP_410680132.1 2442215..2443588(+) (radA/sms) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2]
ATGGCTAAAGCGAAAACCGCCTATGTGTGTAGTGATTGCGGTGCGGAATATGTCCGCTGGCAAGGGCAGTGTAACGCCTG
TAAATCTTGGAATACGATTACGGAAGTACGTCTTGCCCCTGCTAAATCAAGCCGCGCTGATCGTTTTAGCGGTTATGCGG
GGGAAACGCAGGCGAAAATTCAAACCCTCGCCGACATCAGTTTGCAAGAAGTGCCACGTTTTCACAGTGGTTTTTATGAG
CTTGATCGTGTACTAGGCGGGGGGATCGTGCCGGGTAGTGCGATTTTGATCGGCGGACATCCAGGGGCAGGGAAAAGTAC
CCTGTTATTGCAAGTGATGTGTGGTTTGGCTCAAAATATGACCGCACTTTATGTTACGGGCGAGGAATCCTTGCAACAGG
TGGCGATGCGTGCCAATCGGCTTGGGCTGCCAACAGATCGTTTAAATATGCTTTCAGAAACCTCCGTAGAGCAAATTTGC
CATTTGGCCGATCAGCTTAAACCGCAAATCATCGTAGTGGATTCCATTCAAGTGATGCACCTTGCGGATATTCAATCTTC
ACCAGGGAGCGTTTCCCAAGTGCGGGAATGTGCCTCTTTTCTGACCCGTTATGCGAAAACTCGCCAAGTCGCCATTATTA
TGGTGGGACACGTGACCAAAGACGGCACGCTGGCAGGACCTAAGGTGTTGGAACACGCCATTGACTGCTCGCTATTATTA
GAAGGGGAGGCGGATAGCCGTTTTCGCACCTTACGTAGCCACAAAAATCGCTTTGGCGCGGTCAATGAACTTGGCGTGTT
TGCGATGACAGAGCAAGGCTTGCGCGAAGTGAAAAATCCTTCTGCTATTTTTTTAAGCCGTGGCGAAGAAGAAACGGCGG
GAAGTTCTGTAATGGTGTTATGGGAGGGAACACGTCCGCTGTTGGTGGAAATTCAAGCCTTGGTGGATCACTCAATGCTG
GCTAATCCAAGACGAGTTGCGGTGGGCTTAGAACAAAACCGCCTCGCTTTATTATTAGCGGTGCTACATCGCCACGGTGG
CTTGCAAATGTCTGATCAAGACGTGTTTGTCAATGTGGTAGGTGGCGTAAAAGTGAGTGAAACCAGTGCAGACTTGGCAT
TATTACTGGCATTGATTTCCAGCTTCCGAAATCGTCCATTACCAAAAGATCTGGTGGTGTTTGGCGAAGTGGGGCTAGCG
GGGGAAATCCGCCCCGTACCAAGCGGACAAGAACGAATTTCTGAAGCAGCCAAACACGGCTTCACCCGTGCTATCGTCCC
GTTTGCCAATAAACCGAAAAGTGCGGTCAAAAATATGCAAGTTTTTACCGTGAAAAAATTGATTGATGCGTTAAATATTT
TAGATAATATATAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-222)

Subunit ChlI of Mg-chelatase (ChlI)

(345-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.162

100

0.473
  radA Streptococcus mitis NCTC 12261

44.496

93.435

0.416
  radA Streptococcus pneumoniae Rx1

44.496

93.435

0.416
  radA Streptococcus pneumoniae D39

44.496

93.435

0.416
  radA Streptococcus pneumoniae R6

44.496

93.435

0.416
  radA Streptococcus pneumoniae TIGR4

44.496

93.435

0.416
  radA Streptococcus mitis SK321

44.496

93.435

0.416