Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACIO04_RS03900 Genome accession   NZ_CP173229
Coordinates   820518..821024 (-) Length   168 a.a.
NCBI ID   WP_410680739.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 815518..826024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO04_RS03875 (ACIO04_03875) - 816460..816600 (-) 141 WP_156127777.1 hypothetical protein -
  ACIO04_RS03880 (ACIO04_03880) - 816631..817944 (+) 1314 WP_410680737.1 NCS2 family permease -
  ACIO04_RS03885 (ACIO04_03885) comE1/comEA 818206..818562 (+) 357 WP_035685388.1 ComEA family DNA-binding protein Machinery gene
  ACIO04_RS03890 (ACIO04_03890) rdgB 818700..819296 (+) 597 WP_017805053.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  ACIO04_RS03895 (ACIO04_03895) hemW 819296..820450 (+) 1155 WP_410680738.1 radical SAM family heme chaperone HemW -
  ACIO04_RS03900 (ACIO04_03900) luxS 820518..821024 (-) 507 WP_410680739.1 S-ribosylhomocysteine lyase Regulator
  ACIO04_RS03905 (ACIO04_03905) - 821247..821705 (-) 459 WP_410680740.1 YqaA family protein -
  ACIO04_RS03910 (ACIO04_03910) - 821698..822306 (-) 609 WP_035685399.1 sugar O-acetyltransferase -
  ACIO04_RS03915 (ACIO04_03915) - 822307..822909 (-) 603 WP_017805059.1 beta-phosphoglucomutase family hydrolase -
  ACIO04_RS03920 (ACIO04_03920) - 823052..823429 (+) 378 WP_110479105.1 hypothetical protein -
  ACIO04_RS03925 (ACIO04_03925) ispF 823562..824038 (+) 477 WP_264245663.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACIO04_RS03930 (ACIO04_03930) truD 824042..825049 (+) 1008 WP_410680742.1 tRNA pseudouridine(13) synthase TruD -
  ACIO04_RS03935 (ACIO04_03935) surE 825058..825798 (+) 741 WP_410680744.1 5'/3'-nucleotidase SurE -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19108.98 Da        Isoelectric Point: 5.5568

>NTDB_id=957439 ACIO04_RS03900 WP_410680739.1 820518..821024(-) (luxS) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1]
MPLLDSFKVDHTKMNAPAVRVAKIMRTPKGDDITIFDLRFCIPNKEILPPKGIHTLEHLFAGFMRDHLNSEQVEIIDISP
MGCRTGFYMSLIGRPNEQQVVTAWLAAMKDILQVQNQNDIPELNEYQCGTYTEHSLDEAHQIARNILARGIGVNRNDDLL
LDERLLAQ

Nucleotide


Download         Length: 507 bp        

>NTDB_id=957439 ACIO04_RS03900 WP_410680739.1 820518..821024(-) (luxS) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1]
ATGCCGTTACTTGATAGTTTTAAAGTTGATCATACGAAGATGAATGCTCCCGCCGTGCGTGTTGCAAAAATAATGCGTAC
ACCAAAAGGTGATGACATTACCATTTTCGATTTACGTTTTTGTATTCCAAATAAAGAAATTTTACCGCCGAAAGGGATTC
ATACTCTTGAACATCTTTTTGCAGGTTTTATGCGGGATCACTTGAATAGTGAGCAAGTTGAGATTATTGACATTTCTCCA
ATGGGTTGCCGTACAGGGTTTTATATGTCATTAATTGGTAGACCGAATGAGCAACAAGTCGTAACGGCTTGGCTTGCGGC
AATGAAAGATATTCTACAAGTGCAAAATCAAAATGATATTCCTGAATTAAATGAATACCAATGTGGCACTTATACAGAGC
ATTCCTTAGATGAAGCTCATCAGATTGCACGCAATATTCTTGCTCGTGGTATTGGTGTGAATAGAAATGACGATTTATTG
TTAGATGAGCGTTTGCTTGCACAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.096

98.81

0.732