Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACIO04_RS01355 Genome accession   NZ_CP173229
Coordinates   289560..290558 (-) Length   332 a.a.
NCBI ID   WP_410678576.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 284560..295558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO04_RS01340 (ACIO04_01340) ettA 284710..286380 (+) 1671 WP_035684946.1 energy-dependent translational throttle protein EttA -
  ACIO04_RS01345 (ACIO04_01345) pepT 286687..287907 (-) 1221 WP_410680367.1 peptidase T -
  ACIO04_RS01350 (ACIO04_01350) - 287926..289467 (-) 1542 WP_410678575.1 AbgT family transporter -
  ACIO04_RS01355 (ACIO04_01355) cytR 289560..290558 (-) 999 WP_410678576.1 substrate-binding domain-containing protein Regulator
  ACIO04_RS01360 (ACIO04_01360) rbsK 290598..291524 (-) 927 WP_410680368.1 ribokinase -
  ACIO04_RS01365 (ACIO04_01365) - 291606..292871 (-) 1266 WP_410680369.1 NupC/NupG family nucleoside CNT transporter -
  ACIO04_RS01370 (ACIO04_01370) - 293169..294104 (+) 936 WP_410680370.1 nucleoside hydrolase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37322.07 Da        Isoelectric Point: 7.7923

>NTDB_id=957429 ACIO04_RS01355 WP_410678576.1 289560..290558(-) (cytR) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1]
MATMKDIARIAQVSTSTVSHVINNTGYVSDAMRERIMKVVKELNYRPSALARSLKIKQTKTLGMLVTATNNPFFAEVVSG
VEQYCNQHDYNLIISSLDGNEERLEQNIQTLIQKQVDGLLLMYSDSRHSFLKQLDVALPMVIMDWWPTALSADKIYENSE
LGAYLATKCLIEQGHKAIAIITGNLNKSLAQNRLQGYKKALNEHQLAIRDEWIIESHFDFEGGVEGMKKLLQAGKRPTAV
FACSDTIAVGVYQVAWQNGLRIPQDLSVIGYDDITLAQYLAPPLTTIHQPKAELGKLAVETLLERIKNPHKSEQSILLEP
KLIWRDSVQCRK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=957429 ACIO04_RS01355 WP_410678576.1 289560..290558(-) (cytR) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1]
ATGGCAACAATGAAAGATATTGCACGCATTGCACAGGTTTCAACCTCCACCGTGTCGCACGTGATTAATAACACGGGCTA
TGTGAGCGATGCAATGCGAGAACGCATAATGAAGGTTGTCAAAGAACTGAATTATCGCCCTTCCGCCTTGGCGAGAAGTT
TAAAAATTAAGCAAACCAAAACCTTGGGAATGTTGGTTACCGCAACCAACAACCCTTTTTTTGCGGAAGTGGTGAGTGGC
GTTGAGCAGTATTGTAATCAGCACGATTATAATCTGATTATTTCAAGCCTAGATGGCAATGAAGAACGCTTAGAACAAAA
TATTCAAACGCTGATTCAAAAACAGGTGGACGGCTTGTTGTTAATGTATTCTGATAGCCGTCATTCCTTTCTTAAACAAC
TTGATGTTGCCTTGCCAATGGTGATTATGGACTGGTGGCCAACGGCATTAAGTGCGGATAAAATTTATGAAAATTCTGAA
CTTGGTGCATATCTTGCGACAAAATGCTTAATTGAGCAAGGGCATAAAGCGATTGCGATTATCACCGGAAATCTGAATAA
ATCCCTCGCACAAAATCGTTTGCAAGGCTATAAAAAAGCCTTAAACGAACATCAGTTAGCCATTCGTGATGAATGGATTA
TCGAAAGCCATTTTGATTTTGAAGGTGGCGTGGAAGGAATGAAAAAGCTGTTACAAGCGGGCAAACGGCCTACGGCTGTG
TTTGCGTGTAGCGACACGATTGCAGTAGGCGTTTATCAAGTGGCGTGGCAAAATGGTTTGCGTATTCCGCAAGATCTTTC
TGTGATTGGCTATGATGATATTACCCTTGCCCAATATCTCGCCCCACCGCTCACCACCATTCACCAACCTAAAGCTGAAT
TAGGCAAACTTGCGGTGGAAACGCTGTTAGAACGCATTAAAAACCCCCATAAAAGTGAACAATCTATTTTGCTAGAACCT
AAATTAATTTGGCGGGATTCTGTGCAGTGCAGAAAATAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.298

99.096

0.38
  cytR Vibrio parahaemolyticus RIMD 2210633

37.805

98.795

0.373