Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACIO07_RS07920 Genome accession   NZ_CP173228
Coordinates   1572707..1574080 (+) Length   457 a.a.
NCBI ID   WP_410681740.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1567707..1579080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO07_RS07900 (ACIO07_07905) can 1568726..1569424 (-) 699 WP_017805734.1 carbonate dehydratase -
  ACIO07_RS07905 (ACIO07_07910) - 1569494..1570756 (-) 1263 WP_035685767.1 inorganic phosphate transporter -
  ACIO07_RS07910 (ACIO07_07915) - 1570786..1571466 (-) 681 WP_035685763.1 TIGR00153 family protein -
  ACIO07_RS07915 (ACIO07_07920) - 1571623..1572714 (+) 1092 WP_410681739.1 inorganic triphosphatase -
  ACIO07_RS07920 (ACIO07_07925) radA/sms 1572707..1574080 (+) 1374 WP_410681740.1 DNA repair protein RadA Machinery gene
  ACIO07_RS07925 (ACIO07_07930) - 1574160..1578185 (+) 4026 WP_410681741.1 S6 family peptidase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49530.16 Da        Isoelectric Point: 8.1192

>NTDB_id=957412 ACIO07_RS07920 WP_410681740.1 1572707..1574080(+) (radA/sms) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3]
MAKAKTAYVCSDCGAEYVRWQGQCNACKSWNTITEVRLAPAKSSRADRFSGYAGETQAKIQTLADISLQEVPRFHSGFYE
LDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLAQNMTALYVTGEESLQQVAMRANRLGLPTDRLNMLSETSVEQIC
HLADQLKPQIIVVDSIQVMHLADIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDCSLLL
EGEADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRGEEDTAGSSVMVLWEGTRPLLVEIQALVDHSML
ANPRRVTVGLEQNRLALLLAVLHRHGGLQMSDQDVFVNVVGGVKVSETSADLALLLALISSFRNRPLPKDLVVFGEVGLA
GEIRPVPSGQERISEAAKHGFTRAIVPFANKPKSAVKNMQVFTVKKLIDALNILDNI

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=957412 ACIO07_RS07920 WP_410681740.1 1572707..1574080(+) (radA/sms) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3]
ATGGCTAAAGCGAAAACCGCCTATGTGTGTAGCGATTGTGGTGCGGAATATGTCCGCTGGCAAGGGCAGTGTAACGCCTG
TAAATCTTGGAATACGATCACGGAAGTACGTCTTGCCCCAGCTAAATCAAGCCGTGCTGATCGTTTTAGCGGTTATGCGG
GGGAAACGCAGGCGAAAATTCAAACCCTCGCCGACATCAGTTTGCAAGAAGTGCCACGTTTTCACAGTGGGTTTTATGAG
CTTGATCGTGTATTAGGCGGGGGGATCGTGCCGGGCAGTGCCATTTTAATCGGCGGACACCCTGGGGCGGGGAAAAGTAC
CCTGTTATTGCAAGTGATGTGTGGTTTGGCTCAAAATATGACCGCACTTTATGTTACGGGCGAGGAATCCTTGCAACAGG
TGGCGATGCGTGCCAATCGGCTTGGGCTGCCAACAGATCGTTTAAATATGCTTTCAGAAACCTCCGTAGAGCAAATTTGC
CATTTGGCCGATCAGCTTAAACCACAAATCATCGTGGTGGATTCCATTCAAGTAATGCACCTTGCGGATATTCAATCTTC
ACCTGGGAGCGTTTCCCAAGTGCGGGAATGTGCTTCTTTTTTGACCCGTTATGCGAAAACTCGCCAAGTCGCCATCATTA
TGGTTGGACACGTTACCAAAGACGGCACGCTGGCAGGACCTAAGGTGTTAGAACACGCTATTGACTGCTCGTTATTATTA
GAGGGAGAGGCGGATAGCCGTTTTCGCACCTTACGTAGCCACAAAAATCGCTTTGGCGCGGTCAATGAACTCGGCGTGTT
TGCGATGACAGAGCAAGGCTTGCGCGAGGTGAAAAATCCTTCTGCCATATTCTTAAGCCGCGGTGAAGAAGACACCGCAG
GCAGTTCCGTAATGGTGTTATGGGAAGGCACACGCCCGTTATTGGTGGAAATTCAAGCCTTGGTGGATCACTCAATGCTG
GCTAATCCAAGACGGGTCACGGTGGGATTGGAGCAAAATCGTCTCGCTTTATTATTAGCGGTGCTACATCGTCACGGTGG
CTTGCAAATGTCTGATCAAGACGTGTTTGTCAATGTGGTAGGTGGCGTAAAAGTGAGTGAAACCAGTGCAGACTTGGCAT
TATTACTGGCATTGATTTCCAGCTTCCGAAATCGTCCATTACCAAAAGATCTGGTGGTGTTTGGCGAAGTGGGGCTAGCG
GGGGAAATCCGCCCCGTACCAAGCGGACAAGAACGAATTTCCGAAGCAGCCAAACACGGCTTCACCCGTGCTATCGTCCC
GTTTGCCAATAAACCAAAAAGTGCGGTGAAAAATATGCAAGTTTTTACCGTGAAAAAATTGATTGATGCGTTAAATATTT
TAGATAATATATAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-430)

AAA domain (AAA_25)

(84-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.943

100

0.47
  radA Streptococcus mitis NCTC 12261

44.731

93.435

0.418
  radA Streptococcus mitis SK321

44.731

93.435

0.418
  radA Streptococcus pneumoniae Rx1

44.731

93.435

0.418
  radA Streptococcus pneumoniae D39

44.731

93.435

0.418
  radA Streptococcus pneumoniae R6

44.731

93.435

0.418
  radA Streptococcus pneumoniae TIGR4

44.731

93.435

0.418