Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACIO07_RS05950 Genome accession   NZ_CP173228
Coordinates   1151074..1151580 (+) Length   168 a.a.
NCBI ID   WP_035685396.1    Uniprot ID   A0A0F5EQV1
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1146074..1156580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO07_RS05915 (ACIO07_05920) surE 1146299..1147039 (-) 741 WP_410683387.1 5'/3'-nucleotidase SurE -
  ACIO07_RS05920 (ACIO07_05925) truD 1147048..1148055 (-) 1008 WP_410683388.1 tRNA pseudouridine(13) synthase TruD -
  ACIO07_RS05925 (ACIO07_05930) ispF 1148059..1148535 (-) 477 WP_410683389.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACIO07_RS05930 (ACIO07_05935) - 1148668..1149045 (-) 378 WP_017805060.1 hypothetical protein -
  ACIO07_RS05935 (ACIO07_05940) - 1149188..1149790 (+) 603 WP_410683390.1 beta-phosphoglucomutase family hydrolase -
  ACIO07_RS05940 (ACIO07_05945) - 1149791..1150399 (+) 609 WP_410683391.1 sugar O-acetyltransferase -
  ACIO07_RS05945 (ACIO07_05950) - 1150392..1150850 (+) 459 WP_110479107.1 YqaA family protein -
  ACIO07_RS05950 (ACIO07_05955) luxS 1151074..1151580 (+) 507 WP_035685396.1 S-ribosylhomocysteine lyase Regulator
  ACIO07_RS05955 (ACIO07_05960) hemW 1151648..1152802 (-) 1155 WP_046098006.1 radical SAM family heme chaperone HemW -
  ACIO07_RS05960 (ACIO07_05965) rdgB 1152802..1153398 (-) 597 WP_035685390.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  ACIO07_RS05965 (ACIO07_05970) comE1/comEA 1153536..1153892 (-) 357 WP_017805052.1 ComEA family DNA-binding protein Machinery gene
  ACIO07_RS05970 (ACIO07_05975) - 1154154..1155467 (-) 1314 WP_110479111.1 NCS2 family permease -
  ACIO07_RS05975 (ACIO07_05980) - 1155498..1155638 (+) 141 WP_156127777.1 hypothetical protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19094.95 Da        Isoelectric Point: 5.5568

>NTDB_id=957403 ACIO07_RS05950 WP_035685396.1 1151074..1151580(+) (luxS) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3]
MPLLDSFKVDHTKMNAPAVRVAKIMRTPKGDDITIFDLRFCIPNKEILPPKGIHTLEHLFAGFMRDHLNSEQVEIIDISP
MGCRTGFYMSLIGRPNEQQVVTAWLAAMKDILQVQNQNDIPELNEYQCGTYTEHSLDEAHQIARNILARGVGVNRNDDLL
LDERLLAQ

Nucleotide


Download         Length: 507 bp        

>NTDB_id=957403 ACIO07_RS05950 WP_035685396.1 1151074..1151580(+) (luxS) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3]
ATGCCGTTACTTGATAGTTTTAAAGTCGATCATACGAAGATGAATGCTCCCGCCGTGCGTGTTGCAAAAATAATGCGTAC
ACCAAAAGGTGATGACATTACCATTTTCGATTTACGTTTTTGTATTCCAAATAAAGAAATTTTACCGCCGAAAGGGATTC
ATACTCTTGAACATCTTTTTGCAGGTTTTATGCGGGATCACTTGAATAGTGAGCAAGTTGAGATTATTGACATTTCTCCA
ATGGGTTGCCGTACAGGGTTTTATATGTCATTAATTGGTAGACCGAATGAGCAACAAGTCGTAACGGCTTGGCTTGCGGC
AATGAAAGATATTCTACAAGTGCAAAATCAAAATGATATTCCTGAATTAAATGAATACCAATGTGGCACTTATACAGAGC
ATTCCTTAGATGAAGCTCATCAGATTGCACGCAATATTCTTGCTCGTGGTGTTGGGGTGAATAGAAATGACGATTTATTG
TTAGATGAGCGTTTGCTTGCACAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5EQV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.494

98.81

0.726