Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ACIVJH_RS10705 Genome accession   NZ_CP173226
Coordinates   2028161..2030350 (-) Length   729 a.a.
NCBI ID   WP_003698802.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NCTC 8375 [B 5025]     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2023161..2035350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIVJH_RS10680 - 2024211..2024348 (+) 138 WP_153707873.1 hypothetical protein -
  ACIVJH_RS10685 - 2024427..2025197 (+) 771 Protein_2069 ABC transporter permease -
  ACIVJH_RS10690 - 2025224..2025916 (+) 693 WP_003689290.1 ATP-binding cassette domain-containing protein -
  ACIVJH_RS10695 - 2026108..2026722 (+) 615 WP_003703682.1 CadD family cadmium resistance transporter -
  ACIVJH_RS10700 - 2027018..2028114 (+) 1097 Protein_2072 NnrS family protein -
  ACIVJH_RS10705 priA 2028161..2030350 (-) 2190 WP_003698802.1 primosomal protein N' Machinery gene
  ACIVJH_RS10710 - 2030490..2031275 (+) 786 WP_003689299.1 DsbC family protein -
  ACIVJH_RS10715 - 2031374..2033308 (-) 1935 WP_003695602.1 MacB family efflux pump subunit -
  ACIVJH_RS10720 - 2033374..2034552 (-) 1179 WP_113852087.1 MacA family efflux pump subunit -
  ACIVJH_RS10725 - 2034778..2035167 (+) 390 WP_082277493.1 type IV pilin protein -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 81178.00 Da        Isoelectric Point: 8.0826

>NTDB_id=957366 ACIVJH_RS10705 WP_003698802.1 2028161..2030350(-) (priA) [Neisseria gonorrhoeae strain NCTC 8375 [B 5025]]
MIYHRIAVNVPLSDGLLTYSHSEPLPPGTRVLVPFRNKTVVGMVWETDIAPDMDAARILSVQTVFVEEKPLSQSWRDLLA
FTSRYYHYPTGQAVFAALPQGLKETRAVEMPQPPLFYALNETGRAQTPPPARFNKKAALWDALLSGEMTMAALKQANAQA
AKLIEDWAEQGWIETTEAAKPVLRPYRGQASHSEFVLNTDQQKASDEIQTALGRFRSFLLYGITGSGKTEVYFDAMAKVL
AQGRQVLFLLPEINLTPQLLKRVENRFADVPTAVLHSRMAAGRRTQDYLRAMLGQAKLVIGTRLAVFTPLPDVGLIVVDE
EHDGSFKQDNELRYHARDLAVWRAKQGGCPVVLGSATPSLESWHKAQSGAYRLLQLTERAHASAQLPQVDILNIGRLKLD
NGFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCGDCGHTFGCPNCSAKMVLHQRARQLRCHHCDHREPIPFKCPDCG
NQDLTAVGHGTQRVEETLRALLPKAAVVRVDRDSTAHKNDWADLYRRIANDEIDILVGTQMLAKGHDFARLNLVIVLNAD
GSLYSADFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYAVFAENELNERQMFAMPPFGFQTAVR
ADAPRVADAMEFLNAAKETLAPLLPESVSRFGAAPMLMVRLAERERAQVFLESTSRQDLHRAVSLWVQVLQQNRDGKIRW
SVDVDPQEA

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=957366 ACIVJH_RS10705 WP_003698802.1 2028161..2030350(-) (priA) [Neisseria gonorrhoeae strain NCTC 8375 [B 5025]]
ATGATCTACCATCGCATCGCTGTAAACGTGCCGCTTTCAGACGGCCTTTTGACTTATTCGCATTCCGAGCCGCTTCCTCC
GGGAACGCGGGTGCTTGTGCCTTTTCGCAATAAAACTGTTGTCGGGATGGTGTGGGAAACGGATATTGCGCCCGATATGG
ATGCGGCGCGGATTTTGAGCGTTCAGACGGTCTTTGTGGAAGAAAAGCCGCTGTCTCAAAGCTGGCGTGATTTGTTGGCG
TTTACGTCGCGTTATTACCACTATCCGACTGGGCAGGCTGTATTTGCCGCATTGCCGCAGGGTTTGAAGGAAACGCGCGC
GGTGGAAATGCCGCAGCCGCCGTTGTTTTATGCTTTGAACGAAACGGGCAGGGCGCAAACGCCGCCGCCGGCTCGGTTCA
ACAAAAAAGCGGCTTTGTGGGACGCGCTGCTGTCGGGCGAAATGACGATGGCGGCGTTGAAACAGGCAAACGCGCAGGCG
GCGAAATTGATTGAGGATTGGGCGGAGCAGGGCTGGATTGAAACGACGGAAGCGGCGAAACCTGTTTTAAGGCCGTACCG
CGGGCAGGCTTCGCACTCTGAATTTGTATTAAATACCGACCAGCAGAAGGCTTCCGATGAAATTCAGACGGCATTGGGAC
GCTTCCGGTCGTTTCTGCTGTACGGCATTACCGGCAGCGGCAAGACCGAGGTGTATTTCGATGCGATGGCGAAAGTGTTG
GCGCAGGGGCGACAGGTGTTGTTTCTGTTGCCCGAAATCAACCTCACGCCGCAGCTTTTAAAGCGGGTGGAAAACCGTTT
TGCCGACGTGCCGACCGCCGTGTTGCACAGCCGGATGGCGGCAGGCAGGCGCACGCAGGATTATCTGCGCGCGATGTTGG
GGCAGGCGAAGCTGGTGATCGGCACGCGGCTGGCGGTGTTTACGCCTTTGCCTGATGTCGGGCTGATTGTGGTCGATGAG
GAACACGACGGCTCGTTCAAACAAGACAACGAATTGCGCTACCACGCCCGCGATTTGGCGGTGTGGCGGGCGAAGCAGGG
CGGCTGTCCCGTCGTGTTGGGCAGTGCCACGCCCAGCTTGGAGAGTTGGCACAAGGCGCAAAGCGGCGCGTACCGCCTGC
TGCAACTGACCGAACGCGCCCATGCTTCCGCGCAACTGCCACAAGTGGACATCCTCAACATAGGTCGTCTGAAACTCGAT
AACGGCTTCTCACCGCAAGCCTTGCAGCTTTTGAAACAGAACTTTGAAGCGGGCGGTATGTCGCTGGTGTACCTTAACCG
GCGCGGCTTCGCGCCTGCGCTGTTTTGCGGCGACTGCGGCCATACCTTCGGCTGCCCGAACTGCTCCGCCAAAATGGTGC
TGCACCAACGCGCCCGCCAACTGCGCTGCCACCACTGCGACCACCGCGAACCCATCCCGTTCAAATGTCCCGACTGCGGC
AACCAAGACCTGACCGCCGTCGGACACGGTACGCAGCGCGTCGAAGAAACCCTGCGCGCCTTGCTGCCCAAGGCAGCCGT
CGTCCGCGTCGATAGGGACAGTACGGCGCACAAAAACGACTGGGCAGATTTGTACCGCCGCATCGCCAACGACGAAATCG
ACATTCTGGTCGGCACGCAGATGCTTGCCAAAGGCCATGATTTCGCGCGGCTCAACCTCGTTATCGTGTTGAACGCCGAC
GGCAGCCTGTACAGCGCGGATTTCCGTGCGCCGGAAAGGCTGTTTGCCGAGCTGATGCAAGTGTCCGGCAGGGCGGGGCG
CGCCGACAAACCCGGCAAGGTGCTGATACAGACCCAACTGCCCGAACACCCTGTCTTCGCCGCCGTCAAAGCGCAGGACT
ACGCCGTGTTTGCCGAAAACGAATTGAACGAACGGCAAATGTTCGCCATGCCGCCTTTCGGTTTTCAGACGGCCGTCCGT
GCCGATGCGCCGCGTGTTGCCGATGCGATGGAATTTCTCAACGCCGCCAAAGAAACCCTCGCCCCGCTCTTGCCCGAAAG
CGTCTCCCGGTTCGGTGCCGCCCCGATGCTGATGGTGCGCCTTGCCGAACGCGAACGTGCGCAAGTTTTCCTCGAATCAA
CATCCCGACAAGATTTGCACCGCGCCGTGAGTTTGTGGGTGCAGGTGTTGCAGCAGAACCGCGACGGCAAAATCCGATGG
TCGGTGGATGTCGATCCGCAGGAGGCTTGA

Domains

Predicted by InterProScan.

Primosomal protein N C-terminal domain (PriA_C)

(632-726)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-99)

DEAD/DEAH box helicase (DEAD)

(208-361)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(445-471)

Helicase conserved C-terminal domain (Helicase_C)

(516-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

37.228

100

0.376