Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   ACIVJH_RS05520 Genome accession   NZ_CP173226
Coordinates   1031667..1032266 (+) Length   199 a.a.
NCBI ID   WP_113852103.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NCTC 8375 [B 5025]     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1026667..1037266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIVJH_RS05495 - 1026983..1027564 (-) 582 Protein_1059 superoxide dismutase -
  ACIVJH_RS05500 dnaB 1027728..1029134 (+) 1407 WP_113852099.1 replicative DNA helicase -
  ACIVJH_RS05505 pilH 1029442..1030104 (+) 663 WP_113852100.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACIVJH_RS05510 pilV/pilI 1030136..1030750 (+) 615 WP_113852101.1 type IV pilus modification protein PilV Regulator
  ACIVJH_RS05515 pilJ 1030747..1031688 (+) 942 WP_113852102.1 PilW family protein Machinery gene
  ACIVJH_RS05520 pilK 1031667..1032266 (+) 600 WP_113852103.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACIVJH_RS05525 pilL 1032268..1032741 (+) 474 WP_211305724.1 PilX family type IV pilin Machinery gene
  ACIVJH_RS05530 - 1032811..1033119 (-) 309 WP_113852105.1 AzlD family protein -
  ACIVJH_RS05535 - 1033116..1033824 (-) 709 Protein_1067 AzlC family ABC transporter permease -
  ACIVJH_RS05540 dut 1033990..1034442 (+) 453 WP_113852107.1 dUTP diphosphatase -
  ACIVJH_RS05545 dapC 1034520..1035707 (+) 1188 WP_113852108.1 succinyldiaminopimelate transaminase -
  ACIVJH_RS05550 yaaA 1035863..1036642 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21637.58 Da        Isoelectric Point: 8.0870

>NTDB_id=957340 ACIVJH_RS05520 WP_113852103.1 1031667..1032266(+) (pilK) [Neisseria gonorrhoeae strain NCTC 8375 [B 5025]]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNNNGNEEAFGNIVVKGKPIVEAVKRSCPANSASLCIDNKGMEYKKGTAGVSKMPRYII
EYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 600 bp        

>NTDB_id=957340 ACIVJH_RS05520 WP_113852103.1 1031667..1032266(+) (pilK) [Neisseria gonorrhoeae strain NCTC 8375 [B 5025]]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGAAAGGCAAGCCCATCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAATTCTG
CCAGCCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCACGGCAGGCGTCAGCAAAATGCCGCGCTATATTATC
GAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGT
CGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

90.64

100

0.925