Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ACIVIR_RS10680 Genome accession   NZ_CP173225
Coordinates   2075798..2076508 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain 262     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2070798..2081508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIVIR_RS10665 - 2071339..2071587 (-) 249 WP_000364990.1 YneF family protein -
  ACIVIR_RS10670 treC 2071843..2073468 (-) 1626 WP_000171205.1 alpha,alpha-phosphotrehalase -
  ACIVIR_RS10675 treP 2073646..2075613 (-) 1968 WP_050221119.1 PTS system trehalose-specific EIIBC component -
  ACIVIR_RS10680 treR 2075798..2076508 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  ACIVIR_RS10685 - 2076663..2077989 (+) 1327 Protein_2071 ISL3 family transposase -
  ACIVIR_RS10690 - 2078064..2078990 (-) 927 WP_044812815.1 ATP-binding cassette domain-containing protein -
  ACIVIR_RS10695 amiE 2079001..2080068 (-) 1068 WP_000159553.1 ABC transporter ATP-binding protein Regulator
  ACIVIR_RS10700 amiD 2080077..2081003 (-) 927 WP_000103697.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=957291 ACIVIR_RS10680 WP_000760673.1 2075798..2076508(+) (treR) [Streptococcus pneumoniae strain 262]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=957291 ACIVIR_RS10680 WP_000760673.1 2075798..2076508(+) (treR) [Streptococcus pneumoniae strain 262]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAAGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593