Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AABA14_RS05700 Genome accession   NZ_AP028607
Coordinates   1124767..1126434 (-) Length   555 a.a.
NCBI ID   WP_000923577.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1119767..1131434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA14_RS05670 - 1119983..1120786 (-) 804 Protein_1120 IS5 family transposase -
  AABA14_RS05675 (TKY123642_11160) - 1120794..1121096 (-) 303 WP_338168364.1 PTS sugar transporter subunit IIB -
  AABA14_RS05680 (TKY123642_11170) - 1121134..1121631 (-) 498 Protein_1122 PTS sugar transporter subunit IIA -
  AABA14_RS05685 (TKY123642_11180) - 1121812..1122054 (+) 243 WP_050085256.1 hypothetical protein -
  AABA14_RS05690 (TKY123642_11190) lepA 1122135..1123958 (-) 1824 WP_001047204.1 translation elongation factor 4 -
  AABA14_RS05695 (TKY123642_11200) - 1124037..1124765 (-) 729 WP_000133333.1 metallophosphoesterase family protein -
  AABA14_RS05700 (TKY123642_11210) recN 1124767..1126434 (-) 1668 WP_000923577.1 DNA repair protein RecN Machinery gene
  AABA14_RS05705 (TKY123642_11220) - 1126441..1126872 (-) 432 WP_001034415.1 arginine repressor -
  AABA14_RS05710 (TKY123642_11230) - 1126865..1127680 (-) 816 WP_001041079.1 TlyA family RNA methyltransferase -
  AABA14_RS05715 (TKY123642_11240) - 1127673..1128548 (-) 876 WP_000743819.1 polyprenyl synthetase family protein -
  AABA14_RS05720 (TKY123642_11250) - 1128545..1128757 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  AABA14_RS05725 (TKY123642_11260) xseA 1128735..1130075 (-) 1341 WP_001866415.1 exodeoxyribonuclease VII large subunit -
  AABA14_RS05730 (TKY123642_11270) udk 1130203..1130841 (-) 639 WP_001181378.1 uridine kinase -
  AABA14_RS05735 (TKY123642_11280) - 1130949..1131251 (-) 303 WP_000985089.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62782.18 Da        Isoelectric Point: 4.6517

>NTDB_id=95723 AABA14_RS05700 WP_000923577.1 1124767..1126434(-) (recN) [Streptococcus pneumoniae strain Sep2]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDSEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=95723 AABA14_RS05700 WP_000923577.1 1124767..1126434(-) (recN) [Streptococcus pneumoniae strain Sep2]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAGTATGATTCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTTTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44

Multiple sequence alignment