Detailed information NTG0957095

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACIC53_RS05680
• Genome accession: NZ_CP173219
• Coordinates: 1203226..1204230 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain HN41
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1198226..1209230

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIC53_RS05650 (ACIC53_05650)	fghA	1198318..1199169 (+)	852	WP_019484567.1	S-formylglutathione hydrolase	-
ACIC53_RS05655 (ACIC53_05655)	ispF	1199240..1199713 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACIC53_RS05660 (ACIC53_05660)	truD	1199710..1200777 (+)	1068	WP_132445211.1	tRNA pseudouridine(13) synthase TruD	-
ACIC53_RS05665 (ACIC53_05665)	surE	1200765..1201514 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACIC53_RS05670 (ACIC53_05670)	-	1201547..1202182 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACIC53_RS05675 (ACIC53_05675)	-	1202228..1203121 (+)	894	WP_016852568.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACIC53_RS05680 (ACIC53_05680)	rpoS	1203226..1204230 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACIC53_RS05685 (ACIC53_05685)	fdxA	1204657..1204980 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ACIC53_RS05690 (ACIC53_05690)	mutS	1205047..1207614 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ACIC53_RS05695 (ACIC53_05695)	-	1207740..1208747 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=957095 ACIC53_RS05680 WP_003113871.1 1203226..1204230(+) (rpoS) [Pseudomonas aeruginosa strain HN41]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=957095 ACIC53_RS05680 WP_003113871.1 1203226..1204230(+) (rpoS) [Pseudomonas aeruginosa strain HN41]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653