Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACIQTD_RS10810 Genome accession   NZ_CP173185
Coordinates   2226223..2226993 (-) Length   256 a.a.
NCBI ID   WP_004254655.1    Uniprot ID   Q9CE51
Organism   Lactococcus lactis subsp. lactis strain MGEL24009     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2221223..2231993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIQTD_RS10785 - 2221864..2222271 (+) 408 WP_058212148.1 hypothetical protein -
  ACIQTD_RS10790 - 2222373..2222861 (+) 489 WP_058212147.1 hypothetical protein -
  ACIQTD_RS10795 - 2223151..2224332 (+) 1182 WP_404399169.1 tyrosine-type recombinase/integrase -
  ACIQTD_RS10800 - 2224546..2225172 (+) 627 WP_017865091.1 copper homeostasis protein CutC -
  ACIQTD_RS10805 - 2225211..2226230 (-) 1020 WP_404399170.1 ABC transporter permease -
  ACIQTD_RS10810 pptA 2226223..2226993 (-) 771 WP_004254655.1 ABC transporter ATP-binding protein Regulator
  ACIQTD_RS10815 - 2227012..2228817 (-) 1806 WP_058204387.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  ACIQTD_RS10820 - 2229096..2229497 (+) 402 WP_004254651.1 HIT family protein -
  ACIQTD_RS10825 - 2229510..2229731 (+) 222 WP_010906257.1 hypothetical protein -
  ACIQTD_RS10830 - 2229743..2230087 (-) 345 WP_004254648.1 hypothetical protein -
  ACIQTD_RS10835 rplA 2230165..2230854 (-) 690 WP_004254644.1 50S ribosomal protein L1 -
  ACIQTD_RS10840 rplK 2231151..2231576 (-) 426 WP_004254643.1 50S ribosomal protein L11 -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28472.99 Da        Isoelectric Point: 4.5320

>NTDB_id=957055 ACIQTD_RS10810 WP_004254655.1 2226223..2226993(-) (pptA) [Lactococcus lactis subsp. lactis strain MGEL24009]
MLKVTNLTGGYLGHPVLKDLNFEIKEGELVGLIGLNGAGKSTTIQEIIGLLTPYSGQIELDGLTLQQDLEGYRRKIGFIP
ETPSLYEELTLREHIEVTALAYGISVDLAFERAEKLLETFRLSDKLDWFPVNFSKGMKQKVMIICAFLVEPSLYIVDEPF
MGLDPLAIQDLIDLMIDMKKSGSSILMSTHILSTAEKFCDKFIVLHEGQVVAFGTVEELRTQFNQPKASLDEIYLALTKG
NIPNSKEVVEAGKSNE

Nucleotide


Download         Length: 771 bp        

>NTDB_id=957055 ACIQTD_RS10810 WP_004254655.1 2226223..2226993(-) (pptA) [Lactococcus lactis subsp. lactis strain MGEL24009]
ATGTTAAAAGTAACAAATCTAACAGGTGGCTATTTGGGGCATCCTGTCTTAAAAGACCTTAATTTTGAAATTAAAGAAGG
TGAGTTAGTTGGACTCATTGGTTTAAATGGGGCAGGAAAATCGACAACAATTCAAGAAATTATTGGACTTTTGACTCCTT
ATTCTGGACAAATTGAATTAGACGGCTTAACCTTACAACAAGATTTAGAAGGCTATCGTAGAAAAATTGGTTTCATTCCA
GAAACACCAAGTTTGTATGAAGAATTGACTTTGCGTGAACATATTGAAGTGACAGCTTTAGCTTACGGGATTTCTGTTGA
CTTGGCTTTTGAACGTGCTGAAAAATTATTAGAAACTTTCCGCTTGAGTGATAAATTAGATTGGTTCCCTGTGAATTTTT
CAAAAGGGATGAAACAAAAAGTGATGATTATCTGCGCATTCTTAGTGGAACCTTCGCTCTATATTGTTGATGAACCTTTT
ATGGGACTTGATCCGCTTGCGATTCAGGATTTGATTGACTTGATGATTGACATGAAAAAATCAGGAAGTTCGATTTTAAT
GAGTACACATATCTTGTCCACAGCTGAAAAATTCTGTGATAAATTTATTGTTTTGCATGAAGGTCAAGTTGTTGCTTTTG
GAACAGTAGAAGAATTACGGACTCAATTTAATCAGCCTAAGGCAAGTTTAGATGAAATTTATCTTGCCTTAACAAAAGGA
AATATTCCAAACTCTAAAGAAGTTGTAGAGGCAGGAAAGTCAAATGAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CE51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

67.355

94.531

0.637
  pptA Streptococcus thermophilus LMD-9

66.942

94.531

0.633