Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ACIQTD_RS06130 Genome accession   NZ_CP173185
Coordinates   1277437..1278492 (-) Length   351 a.a.
NCBI ID   WP_015426414.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain MGEL24009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1272437..1283492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIQTD_RS06115 trmFO 1274118..1275461 (+) 1344 WP_003131150.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ACIQTD_RS06120 xerS 1275506..1276576 (-) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  ACIQTD_RS06125 - 1277066..1277353 (-) 288 WP_015426413.1 hypothetical protein -
  ACIQTD_RS06130 xerS 1277437..1278492 (-) 1056 WP_015426414.1 tyrosine recombinase XerS Machinery gene
  ACIQTD_RS06135 - 1278985..1279167 (+) 183 WP_404399031.1 hypothetical protein -
  ACIQTD_RS06140 - 1279298..1280050 (-) 753 WP_404399032.1 dihydrodipicolinate synthase family protein -
  ACIQTD_RS06145 - 1280134..1281336 (-) 1203 WP_404399033.1 MFS transporter -
  ACIQTD_RS06150 - 1281308..1282028 (-) 721 Protein_1186 B3/4 domain-containing protein -
  ACIQTD_RS06155 - 1282047..1282580 (-) 534 WP_404399034.1 GNAT family N-acetyltransferase -
  ACIQTD_RS06160 - 1282581..1283036 (-) 456 WP_404399035.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40663.26 Da        Isoelectric Point: 9.3141

>NTDB_id=957024 ACIQTD_RS06130 WP_015426414.1 1277437..1278492(-) (xerS) [Lactococcus lactis subsp. lactis strain MGEL24009]
MSENHGYQYNVNKLMLEFPNYVNEYIQSKRVVPLSEASIYEYCLDFRKYLQWLIDGSITNHNQIKKITLQELENVTKHEL
EDFVLHERLRLESKCGSNTHTSALNRTIAAIKSLYNYLCEQTEDEHGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLF
LGDETKAFLEFVEHNYENSISNRARTSFKKNKIRDLAILSLFLSSGLRCAELVGINLHDLNLETGKVNVMRKEGKKDVVP
IAQFSHKYINNYFVTRSSIDTEIQAFFITDYDQKIRKISNASINKLVAKYSEAYKVRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALSKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=957024 ACIQTD_RS06130 WP_015426414.1 1277437..1278492(-) (xerS) [Lactococcus lactis subsp. lactis strain MGEL24009]
ATGTCAGAAAACCATGGTTATCAATACAATGTTAATAAACTAATGCTAGAATTTCCAAATTATGTTAACGAATATATTCA
ATCGAAAAGAGTTGTTCCGCTGAGTGAAGCGTCAATATATGAATATTGCTTAGACTTTAGAAAGTACCTCCAATGGCTCA
TTGATGGTAGTATAACAAATCATAATCAAATCAAAAAAATTACCTTGCAAGAATTGGAAAATGTTACCAAACATGAATTG
GAGGACTTTGTGTTACATGAGAGACTACGTTTGGAATCTAAATGTGGGTCAAATACACATACTTCAGCTTTAAATCGAAC
AATTGCAGCGATTAAGAGCTTATATAACTATTTATGTGAGCAAACTGAAGATGAACATGGAAATACATACATGACCAGAA
ATGTCAGCCGTTTAATTCATATCCGAAAAAAAAGCGAGACCTTGCATTACCGTGCGGCTCAACTGGAAGGTAAACTATTC
CTTGGAGACGAAACCAAAGCCTTTTTAGAATTTGTTGAACATAACTATGAAAACTCTATCAGTAACCGTGCGAGAACAAG
TTTTAAGAAAAATAAAATCAGAGATTTAGCTATATTAAGTCTTTTTTTATCTTCTGGATTACGTTGTGCGGAACTAGTAG
GGATCAATCTACACGATTTAAACCTTGAAACTGGGAAAGTAAATGTGATGAGAAAAGAGGGAAAAAAAGACGTTGTCCCG
ATTGCCCAGTTTTCACACAAATATATAAATAATTATTTTGTGACAAGAAGTAGCATAGATACTGAGATACAAGCCTTTTT
CATAACAGATTACGACCAAAAAATAAGAAAAATCTCTAACGCTTCAATAAATAAGCTAGTGGCGAAGTATTCAGAAGCCT
ATAAAGTTCGTGTGACACCTCATACACTAAGACATACATTCGCAACGAGGCTCTATAATGTCAGTCACTCTCAAGTTCTT
GTCAGCAATCAATTAGGGCATTCATCAACTAAACCTACAGAACTATATACCCACATTGTCAGTGCTGAAGCTAAAGATGC
ATTAAGCAAGTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(178-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

45.455

100

0.456