Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   AABA14_RS02775 Genome accession   NZ_AP028607
Coordinates   530145..530411 (+) Length   88 a.a.
NCBI ID   WP_001820593.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 525145..535411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA14_RS02755 (TKY123642_05290) - 525400..525909 (+) 510 WP_000619950.1 N-acetyltransferase -
  AABA14_RS02760 (TKY123642_05300) pheT 525986..528391 (+) 2406 WP_338168457.1 phenylalanine--tRNA ligase subunit beta -
  AABA14_RS02765 (TKY123642_05310) - 528459..529460 (-) 1002 WP_000597985.1 endonuclease/exonuclease/phosphatase family protein -
  AABA14_RS02770 - 529616..530061 (+) 446 Protein_545 helix-turn-helix domain-containing protein -
  AABA14_RS02775 (TKY123642_05340) HI0659 530145..530411 (+) 267 WP_001820593.1 helix-turn-helix transcriptional regulator Machinery gene
  AABA14_RS02780 (TKY123642_05350) metE 530672..532921 (+) 2250 WP_050292440.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  AABA14_RS02785 (TKY123642_05360) metF 532985..533851 (+) 867 WP_000089979.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9670.12 Da        Isoelectric Point: 4.3934

>NTDB_id=95699 AABA14_RS02775 WP_001820593.1 530145..530411(+) (HI0659) [Streptococcus pneumoniae strain Sep2]
MEGCPSELFSKEEILESDMRVAIMSELIEARHEQGINQRKLEELSGVSQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=95699 AABA14_RS02775 WP_001820593.1 530145..530411(+) (HI0659) [Streptococcus pneumoniae strain Sep2]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATTATGAGCGAGTT
GATTGAAGCTAGACATGAACAAGGAATCAATCAGAGAAAGCTAGAAGAACTCAGTGGAGTGAGTCAACCTGTCATAGCTA
GGATGGAAACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489

Multiple sequence alignment