Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   ACIQTD_RS00020 Genome accession   NZ_CP173185
Coordinates   6065..9676 (+) Length   1203 a.a.
NCBI ID   WP_270251014.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain MGEL24009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1065..14676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIQTD_RS00010 dnaN 1525..2667 (+) 1143 WP_003130856.1 DNA polymerase III subunit beta -
  ACIQTD_RS00015 rexB 2773..6072 (+) 3300 WP_058204265.1 ATP-dependent nuclease subunit B -
  ACIQTD_RS00020 rexA 6065..9676 (+) 3612 WP_270251014.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  ACIQTD_RS00025 - 9713..9913 (+) 201 WP_003132155.1 DUF951 domain-containing protein -
  ACIQTD_RS00030 - 9923..10480 (-) 558 WP_270251015.1 helix-turn-helix domain-containing protein -
  ACIQTD_RS00035 ychF 10762..11877 (+) 1116 WP_015425597.1 redox-regulated ATPase YchF -
  ACIQTD_RS00040 - 11989..12312 (+) 324 WP_010905027.1 helix-turn-helix domain-containing protein -
  ACIQTD_RS00045 - 12567..12911 (+) 345 WP_012896907.1 hypothetical protein -

Sequence

Protein


Download         Length: 1203 a.a.        Molecular weight: 138792.85 Da        Isoelectric Point: 4.9693

>NTDB_id=956983 ACIQTD_RS00020 WP_270251014.1 6065..9676(+) (rexA) [Lactococcus lactis subsp. lactis strain MGEL24009]
MSEVKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASELRMRLERDLKKARQES
SDENQARRLTLALQNLSNADIGTMDSFTQKLTKTNFNRVNIDPNFRILADQTESDLIRQEVFEQLVESYLSEDDGLNISK
EKFEELIKNFSKDRNIAGFQKVVYTIYRFASATENPIKWLEDQFLKGFETYKSLTDLSADFSADIKENLLIFFELLETSL
TNGVIAKKGAGRDKANLILDNKNELLEAITTKDFATFTELFLSIDTDIRVGSSKDEILSALKKDFSAQKQDLVGSKSKPG
EIRKFVDKIKHGQLIEKYQNQAFEIAENLQKFVIEFYQSYLERKKNENAFEYSDIAHFAIEILEENPDIRETLREHYDEI
MIDEYQDTSHTQERMLELLSNGHNLFMVGDIKQSIYGFRLADPGLFLEKYKDYAKTENPNQLIRLKENFRSRGEVLTFTN
DIFKHLMDEKLGEMTYGKEEALVQGNITDYPVESEKDFYPELLLYKENTSDEETDESEVRISDGEIKGAAQEIKKLIEAG
VEPKDIAILVRSKSNNNKIEDILLSYDIPVVLDEGRVDFLKSMEVLIMLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDEL
TRISTQGSHDLRFWDKILLSLNKEGQNPELINPSLENKLKAFHKKFTEWRKLVNQVAIHDLLWKIYTETYYFDYVGALKN
GEMRQANLQALAVRAESYESSGYKGLFKFVRLINKFMEQNNDLASVNIKLPQNAVRVMTFHKSKGLEFDYVFLMNLQSRF
NDRDLKEDVILSRENGLGMKLIADLKDEADVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLV
GKIKETDKKSGLDLYDNASLEGKILEDKFRNSSRGFQHWILALQNATKLPIKLNVYTKEELEAEKLEFTSQPDFKKLVEE
SEKFDNIMAYSDEIQKAQKIMNYEYPHQAATELSSIQTPSQVKKRSYEKQLQVGEIQPKSEFTRVKKLDFSDFGPKKVTA
AEIGSATHSFMQYADFSQADLFSFQATLNEMGFDEKIKNQIDIAKILTLFDTDFGQFLSENVDKTVKEAPFSMLRTDEFA
KEQYIVRGICDGFVKLTDKIILFDYKTDRFTSSSAISEIKERYRDQMNLYSEALKKAYDVNQVDKYLILLGGPQQVFVEK
LDD

Nucleotide


Download         Length: 3612 bp        

>NTDB_id=956983 ACIQTD_RS00020 WP_270251014.1 6065..9676(+) (rexA) [Lactococcus lactis subsp. lactis strain MGEL24009]
ATGAGTGAAGTAAAATTAACTCCAGAGCAAAATGAAGCCATTCATAGTTCTGGTAAGAATATTCTAGTTTCAGCGAGTGC
TGGTTCCGGAAAAACTTTTGTTATGGCTCAAAGAATTGTCGAGAAAGTCAAACAAGGAATTGAAATTGATCGACTTTTCA
TTTCCACATTTACAAAAAAAGCAGCAAGCGAATTACGGATGCGGCTTGAGCGAGATTTAAAAAAAGCCAGACAAGAAAGT
TCTGATGAAAATCAAGCTCGTAGGTTGACACTTGCTTTACAGAACCTGTCAAATGCTGATATTGGAACTATGGATAGTTT
CACCCAAAAATTGACAAAAACGAATTTCAATCGAGTAAATATTGACCCAAATTTCCGAATCTTAGCTGATCAAACAGAGA
GTGATTTAATTAGACAAGAAGTCTTTGAACAATTGGTTGAGTCTTATCTATCAGAAGATGATGGATTGAATATTTCAAAA
GAAAAATTTGAAGAACTTATAAAAAATTTTTCTAAAGACAGAAATATTGCTGGTTTTCAAAAAGTAGTTTACACTATTTA
CCGTTTTGCGTCAGCAACTGAAAATCCAATAAAGTGGTTAGAAGATCAATTTTTAAAAGGTTTTGAAACATATAAATCAC
TGACAGACTTGTCTGCAGATTTTTCAGCAGATATAAAAGAGAATTTACTGATATTTTTTGAACTTCTAGAAACTTCATTA
ACCAATGGAGTAATTGCTAAAAAAGGGGCTGGACGTGATAAGGCCAATCTTATTTTAGATAATAAAAATGAACTCTTAGA
AGCAATAACCACTAAAGATTTTGCAACTTTCACAGAACTATTTTTATCAATAGATACAGATATTCGAGTGGGTTCTTCAA
AAGATGAAATACTTTCGGCTCTGAAAAAAGATTTTTCAGCACAAAAGCAAGACTTAGTCGGCTCAAAATCCAAACCTGGA
GAAATTCGGAAGTTTGTTGATAAAATAAAACATGGTCAGTTGATTGAAAAATATCAAAATCAAGCATTTGAAATCGCAGA
AAACTTACAAAAATTTGTTATTGAGTTTTACCAAAGTTATTTAGAACGTAAAAAGAATGAAAATGCCTTTGAGTACTCTG
ATATCGCACACTTTGCCATCGAAATTTTAGAGGAAAATCCAGATATACGTGAAACTTTAAGAGAACATTATGATGAAATC
ATGATTGATGAGTATCAGGATACCAGCCACACTCAGGAGCGAATGCTGGAACTTTTATCGAATGGACATAATCTCTTCAT
GGTTGGTGATATTAAGCAATCAATTTATGGCTTTCGTTTAGCTGACCCTGGCCTCTTTTTAGAAAAATATAAAGACTATG
CCAAGACAGAAAATCCAAATCAACTAATTCGCTTAAAAGAAAACTTTCGTTCACGTGGTGAGGTTTTAACATTTACAAAT
GATATCTTTAAACACCTGATGGATGAAAAATTAGGTGAGATGACTTATGGCAAAGAAGAAGCATTAGTTCAAGGAAATAT
TACTGATTATCCAGTTGAATCTGAGAAAGATTTTTATCCAGAACTTCTTTTATACAAAGAAAATACAAGTGATGAAGAAA
CAGATGAATCCGAAGTAAGAATTTCGGATGGAGAGATTAAAGGAGCAGCTCAAGAAATAAAAAAATTGATTGAAGCTGGA
GTTGAACCAAAAGATATAGCAATCTTGGTTCGTTCTAAATCAAATAATAATAAAATTGAGGATATTCTGCTTAGTTACGA
TATTCCGGTCGTTCTTGATGAAGGTCGAGTTGATTTTTTGAAATCAATGGAAGTCTTAATTATGCTAGACGTTTTACGAG
CAATTGATAATCCACTCTATGATTTATCATTGGTTGCGATGTTAAGGTCTCCGTTATTTGGATTTAATGAAGATGAATTA
ACTAGAATCAGTACTCAAGGAAGCCATGACCTTAGATTTTGGGATAAAATTCTTTTGTCACTTAATAAAGAAGGACAAAA
TCCAGAACTTATCAATCCTTCCTTAGAGAACAAGCTTAAAGCATTTCATAAGAAGTTTACAGAGTGGCGTAAACTTGTAA
ACCAAGTTGCAATTCATGATTTACTTTGGAAAATATATACCGAAACCTACTATTTTGACTATGTTGGTGCCTTAAAAAAT
GGTGAAATGCGCCAAGCGAACTTACAAGCCTTAGCGGTTCGAGCAGAATCATATGAAAGTTCTGGTTATAAAGGATTATT
TAAATTTGTAAGATTAATCAACAAATTTATGGAACAAAATAATGATTTAGCTTCTGTTAATATAAAACTTCCTCAAAATG
CTGTTCGAGTGATGACCTTCCATAAATCAAAAGGATTAGAATTTGATTATGTCTTTTTAATGAATTTACAATCTCGTTTC
AACGATCGTGATTTGAAAGAAGATGTTATCCTAAGTCGTGAAAATGGTTTAGGAATGAAGCTTATTGCTGATTTAAAGGA
TGAAGCAGATGTTATAACTGATTTCCCTTATGCTTTAGTGAAAATGGAAACATTCCCTTATATGGTGAATAAAGACTTAA
AACAAAGAGCAGCTCTCTCAGAAGAAATGCGTGTTTTATATGTTGCATTTACACGAGCAAAGAAAAAACTTTATCTTGTT
GGAAAAATAAAAGAAACAGATAAAAAATCAGGACTTGACCTTTATGATAATGCAAGTTTAGAAGGGAAGATTTTAGAAGA
TAAATTTCGTAATTCAAGTCGCGGTTTTCAACACTGGATATTGGCGCTTCAAAATGCCACAAAACTTCCGATTAAACTCA
ATGTCTACACAAAAGAAGAGTTGGAAGCAGAAAAACTTGAATTTACAAGTCAACCTGATTTCAAAAAATTGGTCGAAGAA
TCGGAAAAATTTGATAATATCATGGCCTATTCTGATGAAATACAAAAAGCTCAAAAAATTATGAATTATGAATATCCACA
TCAAGCAGCAACAGAGCTTTCAAGTATTCAAACACCAAGTCAGGTTAAAAAACGAAGCTACGAAAAACAATTACAAGTGG
GTGAAATTCAACCGAAAAGTGAATTTACTCGGGTCAAAAAACTAGATTTTTCTGATTTTGGTCCTAAGAAAGTTACTGCT
GCAGAAATCGGTTCGGCAACACATAGTTTTATGCAGTATGCAGATTTTTCTCAAGCAGATTTATTTAGTTTTCAAGCGAC
ACTTAATGAAATGGGATTTGATGAAAAAATAAAAAATCAAATTGATATTGCTAAAATTTTGACTTTGTTTGATACAGATT
TCGGTCAGTTTTTATCGGAAAATGTTGATAAAACAGTTAAAGAAGCACCATTTTCAATGTTGAGAACAGATGAATTTGCT
AAAGAGCAGTATATTGTTCGGGGAATTTGTGATGGATTTGTTAAACTTACTGATAAAATCATTCTATTTGATTATAAGAC
GGATAGATTTACAAGTTCTTCAGCTATTTCTGAAATAAAAGAGCGTTATAGAGATCAGATGAATCTTTATAGTGAGGCTT
TGAAAAAAGCCTACGATGTCAACCAAGTTGACAAGTATCTCATTTTATTAGGAGGCCCTCAGCAAGTTTTTGTTGAAAAA
CTAGATGATTAG

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(463-879)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(6-453)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

41.345

100

0.419