Detailed information NTG0956831

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACH106_RS05025
• Genome accession: NZ_CP173160
• Coordinates: 1037031..1038023 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain JX2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1032031..1043023

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACH106_RS04995	ispD	1032092..1032802 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACH106_RS05000	ispF	1032802..1033281 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACH106_RS05005	truD	1033278..1034327 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACH106_RS05010	surE	1034308..1035069 (+)	762	WP_001472109.1	5'/3'-nucleotidase SurE	-
ACH106_RS05015	pcm	1035063..1035689 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACH106_RS05020	nlpD	1035874..1036968 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACH106_RS05025	rpoS	1037031..1038023 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACH106_RS05030	-	1038144..1038551 (-)	408	WP_001208072.1	MarR family winged helix-turn-helix transcriptional regulator	-
ACH106_RS05035	-	1038698..1039291 (+)	594	WP_039022715.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
ACH106_RS05040	-	1039291..1040718 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
ACH106_RS05045	-	1040729..1040965 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
ACH106_RS05050	ygbN	1041004..1042368 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=956831 ACH106_RS05025 WP_000081550.1 1037031..1038023(+) (rpoS) [Escherichia coli strain JX2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=956831 ACH106_RS05025 WP_000081550.1 1037031..1038023(+) (rpoS) [Escherichia coli strain JX2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715