Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHL97_RS08640 Genome accession   NZ_CP149135
Coordinates   1819157..1819771 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii isolate FELIX_MS426     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1814157..1824771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL97_RS08620 - 1814528..1816288 (-) 1761 WP_003035878.1 Lon protease family protein -
  WHL97_RS08625 matP 1816474..1816926 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  WHL97_RS08630 ompA 1817014..1818072 (-) 1059 WP_003836839.1 porin OmpA -
  WHL97_RS08635 sulA 1818430..1818939 (-) 510 WP_003836838.1 SOS-induced cell division inhibitor SulA -
  WHL97_RS08640 sxy/tfoX 1819157..1819771 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  WHL97_RS08645 yccS 1819749..1821902 (-) 2154 WP_032941200.1 YccS family putative transporter -
  WHL97_RS08650 - 1821921..1822367 (-) 447 WP_003035892.1 YccF domain-containing protein -
  WHL97_RS08655 helD 1822493..1824547 (+) 2055 WP_003836836.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=956787 WHL97_RS08640 WP_003035889.1 1819157..1819771(+) (sxy/tfoX) [Citrobacter freundii isolate FELIX_MS426]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=956787 WHL97_RS08640 WP_003035889.1 1819157..1819771(+) (sxy/tfoX) [Citrobacter freundii isolate FELIX_MS426]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAATGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACAATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686