Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   WIR04_RS01830 Genome accession   NZ_CP149130
Coordinates   400192..401631 (+) Length   479 a.a.
NCBI ID   WP_338890027.1    Uniprot ID   -
Organism   Aeromonas rivipollensis strain BE1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 395192..406631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WIR04_RS01800 mlaF 395770..396570 (-) 801 WP_338890018.1 phospholipid ABC transporter ATP-binding protein MlaF -
  WIR04_RS01805 - 396777..397772 (+) 996 WP_338890020.1 KpsF/GutQ family sugar-phosphate isomerase -
  WIR04_RS01810 kdsC 397772..398326 (+) 555 WP_338890022.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  WIR04_RS01815 lptC 398323..398883 (+) 561 WP_338890024.1 LPS export ABC transporter periplasmic protein LptC -
  WIR04_RS01820 lptA 398870..399388 (+) 519 WP_338892427.1 lipopolysaccharide transport periplasmic protein LptA -
  WIR04_RS01825 lptB 399401..400126 (+) 726 WP_307765832.1 LPS export ABC transporter ATP-binding protein -
  WIR04_RS01830 rpoN/rpoN1 400192..401631 (+) 1440 WP_338890027.1 RNA polymerase factor sigma-54 Machinery gene
  WIR04_RS01835 hpf 401652..401939 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  WIR04_RS01840 ptsN 401942..402388 (+) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  WIR04_RS01845 rapZ 402429..403295 (+) 867 WP_182787433.1 RNase adapter RapZ -
  WIR04_RS01850 npr 403316..403588 (+) 273 WP_005331359.1 PTS phosphocarrier protein NPr -
  WIR04_RS01855 - 403607..405511 (-) 1905 WP_338890030.1 BglG family transcription antiterminator -
  WIR04_RS01860 dagF 405618..406358 (-) 741 WP_338890033.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53720.65 Da        Isoelectric Point: 4.4152

>NTDB_id=956757 WIR04_RS01830 WP_338890027.1 400192..401631(+) (rpoN/rpoN1) [Aeromonas rivipollensis strain BE1]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSPIEPQDASQLDSSDAMAQDKMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDLDAAIALAIIDAIDESGYLTASLED
IQAAVSSEEVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAREVIRDHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGAKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=956757 WIR04_RS01830 WP_338890027.1 400192..401631(+) (rpoN/rpoN1) [Aeromonas rivipollensis strain BE1]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCACTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGATAATAACCCCTTGCTGGAGCAGGAGGAGAATGAAG
CGCAGGAAACCAGCCCGATAGAGCCCCAGGACGCCAGTCAACTCGACTCCAGCGACGCCATGGCGCAGGACAAGATGCCG
GATGAGCTGCCTGTCGACACCACCTGGGATGAGGTCTACTCCGCCGGTACGGCCCAGAGCGCCGGCCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGAGAAACCACCGAGAACCTGCAGGACTATCTGCTGTGGCAGATGCGACTGACGCCGTTCA
GCGATCTGGATGCCGCCATCGCCCTCGCCATCATCGATGCCATCGATGAGTCCGGCTACCTGACCGCCTCTCTCGAAGAT
ATTCAGGCTGCAGTCAGCAGTGAAGAGGTAGAAGTTGAACTGGATGAAGTGGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTTGGCATTGCCGCGCGTTCGGTGCAGGAGTGTCTGCTGATCCAGCTTGGCCAGTACTCGCCGGATCTGCCCT
GGCTCAATGAGGCAAGGGAGGTGATTCGCGACCACATGGACCTGCTCGGCAACCGTGACTACCGCACTCTGGCGCGAAAG
ACCCGGCTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTCATCCAGCAGCTGGAGCCGAGACCTGGCAATGGCATCAT
CCAGAGTGAATCGCAATACGTGATCCCGGACGTCTCAGTGGTCAAGAAGGGGGCAAAGTGGGTGGTTGAGCTCAACCCGG
ATTCGGCGCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCACGCAATGCCCGCAGCAGCACTGATACCCAGTTC
ATTCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGCAATGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAACAGCAGGGCTTCTTCGAATACGGGGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCCG
AGGCGGTGGAGATGCACGAGTCGACGATTTCACGGGTGACGACCCAGAAGTACATGCATACGCCCCGTGGCATCTTTGAA
CTGAAGTTTTTTTTCTCCAGTCATGTCAACACGGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCCGAAAACCCGGCCAAACCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.667

100

0.497