Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   WJM57_RS01760 Genome accession   NZ_CP149127
Coordinates   359822..361261 (+) Length   479 a.a.
NCBI ID   WP_059112774.1    Uniprot ID   -
Organism   Aeromonas salmonicida strain BE4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 354822..366261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM57_RS01730 mlaF 355399..356199 (-) 801 WP_011898278.1 phospholipid ABC transporter ATP-binding protein MlaF -
  WJM57_RS01735 - 356407..357402 (+) 996 WP_339022286.1 KpsF/GutQ family sugar-phosphate isomerase -
  WJM57_RS01740 kdsC 357402..357956 (+) 555 WP_005314419.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  WJM57_RS01745 lptC 357953..358513 (+) 561 WP_005314417.1 LPS export ABC transporter periplasmic protein LptC -
  WJM57_RS01750 lptA 358500..359027 (+) 528 WP_005314414.1 lipopolysaccharide transport periplasmic protein LptA -
  WJM57_RS01755 lptB 359031..359756 (+) 726 WP_125597214.1 LPS export ABC transporter ATP-binding protein -
  WJM57_RS01760 rpoN/rpoN1 359822..361261 (+) 1440 WP_059112774.1 RNA polymerase factor sigma-54 Machinery gene
  WJM57_RS01765 hpf 361283..361570 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  WJM57_RS01770 ptsN 361573..362019 (+) 447 WP_005314406.1 PTS IIA-like nitrogen regulatory protein PtsN -
  WJM57_RS01775 rapZ 362062..362928 (+) 867 WP_005314405.1 RNase adapter RapZ -
  WJM57_RS01780 npr 362949..363221 (+) 273 WP_005314403.1 PTS phosphocarrier protein NPr -
  WJM57_RS01785 - 363240..365144 (-) 1905 WP_339022291.1 PRD domain-containing protein -
  WJM57_RS01790 - 365248..365988 (-) 741 WP_339022293.1 KDGP aldolase family protein -
  WJM57_RS01795 - 366023..366097 (-) 75 Protein_334 2-dehydro-3-deoxyphosphooctonate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53863.79 Da        Isoelectric Point: 4.3459

>NTDB_id=956702 WJM57_RS01760 WP_059112774.1 359822..361261(+) (rpoN/rpoN1) [Aeromonas salmonicida strain BE4]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENDVQETSPEEPVDDSQLDSSDAMAQDQMP
DELPVDTTWEDVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDLDAAIALAIIDAIDDSGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYAPELPWLNEAREVIKEHMDLLGNRDYRTLARK
TKLKESDLKEVLDLIQQLEPRPGNGIIQSDSQYVIPDVTVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVATCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=956702 WJM57_RS01760 WP_059112774.1 359822..361261(+) (rpoN/rpoN1) [Aeromonas salmonicida strain BE4]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGATAACAATCCTTTGCTTGAGCAAGAGGAGAATGACG
TTCAGGAGACCAGCCCGGAAGAGCCCGTCGACGACAGTCAGCTCGACTCCAGCGATGCCATGGCCCAGGATCAGATGCCG
GACGAACTGCCGGTAGATACCACCTGGGAAGATGTCTATTCAGCCGGCACAGCCCAGAGCGCAGGCCCCATCCACGATGG
GGAGGACAGCGTCTATCAGGGGGAAACCACCGAGAACCTGCAGGACTATCTGCTGTGGCAGATGCGCCTCACCCCGTTCA
GCGATCTGGATGCGGCCATTGCGCTGGCCATCATAGATGCCATCGATGACTCCGGTTATCTGACCGTCTCTCTCGAAGAT
ATACAGGCGGCGGTGAGCAGCGAGGATGTCGAGGTGGAGCTCGACGAGGTCGAGGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATTGCCGCTCGCTCGGTGCAGGAGTGTCTGCTGATCCAGCTCGGCCAGTACGCTCCTGAACTGCCCT
GGCTCAATGAGGCCAGGGAGGTAATCAAGGAGCACATGGACTTGCTCGGCAACCGTGATTACCGCACCCTGGCCCGCAAG
ACCAAGCTCAAGGAGAGTGACCTCAAGGAGGTGCTGGACCTTATCCAGCAACTGGAGCCCAGGCCGGGTAACGGCATCAT
ACAGAGTGACTCCCAGTACGTGATCCCGGATGTCACCGTCGTCAAGAAGGGCAACAAATGGGTCGTTGAGCTCAACCCTG
ATTCTGCACCGCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGTCAGGCGCGTACCAGCCAGGATACCCAGTTC
ATTCGCTCCCACTTGCAAGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGTCGCAACGACACCCTGCTCAAGGTGGCGAC
CTGTATTGTCGAGCAACAACAGGGCTTTTTCGAGTATGGTGAAGAAGCCATGAAGCCCATGGTGCTCAACGATATCGCCG
AGGCGGTGGAGATGCATGAGTCGACCATTTCCAGGGTAACGACCCAGAAATACATGCATACCCCCCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGTCATGTGAACACAGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTGATCAA
GAAGCTGGTGACGGCGGAGAATCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTACTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.776

100

0.486