Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PA6536_RS30440 Genome accession   NZ_CP173022
Coordinates   6458584..6459180 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain PA6536     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6453584..6464180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA6536_RS30420 (PA6536_06000) aroK 6454715..6455233 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PA6536_RS30425 (PA6536_06001) pilQ 6455245..6457389 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  PA6536_RS30430 (PA6536_06002) comL/pilP 6457443..6457967 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PA6536_RS30435 (PA6536_06003) pilO 6457964..6458587 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PA6536_RS30440 (PA6536_06004) pilN 6458584..6459180 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PA6536_RS30445 (PA6536_06005) pilM 6459180..6460244 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PA6536_RS30450 (PA6536_06006) - 6460429..6462900 (+) 2472 WP_043096086.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=956604 PA6536_RS30440 WP_003095839.1 6458584..6459180(-) (pilN) [Pseudomonas aeruginosa strain PA6536]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=956604 PA6536_RS30440 WP_003095839.1 6458584..6459180(-) (pilN) [Pseudomonas aeruginosa strain PA6536]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCGGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGATTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGTCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATTGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369