Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PA6536_RS30430 Genome accession   NZ_CP173022
Coordinates   6457443..6457967 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PA6536     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6452443..6462967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA6536_RS30415 (PA6536_05999) aroB 6453559..6454665 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  PA6536_RS30420 (PA6536_06000) aroK 6454715..6455233 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PA6536_RS30425 (PA6536_06001) pilQ 6455245..6457389 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  PA6536_RS30430 (PA6536_06002) comL/pilP 6457443..6457967 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PA6536_RS30435 (PA6536_06003) pilO 6457964..6458587 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PA6536_RS30440 (PA6536_06004) pilN 6458584..6459180 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PA6536_RS30445 (PA6536_06005) pilM 6459180..6460244 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PA6536_RS30450 (PA6536_06006) - 6460429..6462900 (+) 2472 WP_043096086.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=956602 PA6536_RS30430 WP_003095836.1 6457443..6457967(-) (comL/pilP) [Pseudomonas aeruginosa strain PA6536]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=956602 PA6536_RS30430 WP_003095836.1 6457443..6457967(-) (comL/pilP) [Pseudomonas aeruginosa strain PA6536]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362