Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   PA6536_RS28150 Genome accession   NZ_CP173022
Coordinates   5948505..5949866 (-) Length   453 a.a.
NCBI ID   WP_019372180.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA6536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5943505..5954866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA6536_RS28125 (PA6536_05543) yjiA 5943692..5944696 (-) 1005 WP_034043419.1 GTPase -
  PA6536_RS28130 (PA6536_05544) - 5944756..5944959 (-) 204 WP_003094856.1 YbdD/YjiX family protein -
  PA6536_RS28135 (PA6536_05545) - 5945008..5947074 (-) 2067 WP_003094859.1 carbon starvation CstA family protein -
  PA6536_RS28140 (PA6536_05546) - 5947412..5947918 (-) 507 WP_003094862.1 DUF3015 domain-containing protein -
  PA6536_RS28145 (PA6536_05547) mapZ 5948121..5948498 (+) 378 WP_043096277.1 cyclic di-GMP-binding protein MapZ -
  PA6536_RS28150 (PA6536_05548) radA/sms 5948505..5949866 (-) 1362 WP_019372180.1 DNA repair protein RadA Machinery gene
  PA6536_RS28155 (PA6536_05549) - 5949976..5950410 (+) 435 WP_043096275.1 CopD family protein -
  PA6536_RS28160 (PA6536_05550) - 5950472..5950726 (-) 255 WP_003104887.1 YdcH family protein -
  PA6536_RS28165 (PA6536_05551) - 5950801..5951352 (-) 552 WP_003121338.1 ankyrin repeat domain-containing protein -
  PA6536_RS28170 (PA6536_05552) katB 5951406..5952947 (-) 1542 WP_003094881.1 catalase KatB -
  PA6536_RS28175 - 5953054..5953428 (-) 375 WP_172965164.1 hypothetical protein -
  PA6536_RS28180 (PA6536_05553) mscL 5953471..5953884 (+) 414 WP_003104883.1 large-conductance mechanosensitive channel protein MscL -
  PA6536_RS28185 (PA6536_05554) - 5953989..5954765 (-) 777 WP_003110878.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48438.86 Da        Isoelectric Point: 6.8357

>NTDB_id=956597 PA6536_RS28150 WP_019372180.1 5948505..5949866(-) (radA/sms) [Pseudomonas aeruginosa strain PA6536]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVVEAVPSGSGRGGWAGQQANLKTLAEVSVEEMPRFTTGSTELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLASRVPALYVTGEESQQQVAMRARRLSLPEDKLKVMTETSIETIIATA
RQEQPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAAMLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEV
RPVPSGQERLKEAGKHGFKRAIVPLGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=956597 PA6536_RS28150 WP_019372180.1 5948505..5949866(-) (radA/sms) [Pseudomonas aeruginosa strain PA6536]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGCGCGGACTG
CGGGGCCTGGAACACCCTGGTGGAGACCGTCGTCGAGGCCGTGCCGAGCGGCTCCGGCCGCGGCGGCTGGGCCGGCCAGC
AGGCCAACCTGAAGACCCTGGCGGAGGTCAGCGTCGAGGAAATGCCGCGCTTCACGACCGGCTCCACCGAACTGGACCGG
GTTCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCATTCTCCT
GCAGACCCTTTGCAACCTGGCCAGCCGCGTCCCGGCGCTGTACGTCACCGGCGAGGAATCCCAGCAGCAGGTGGCGATGC
GCGCGCGGCGCCTGTCGTTGCCGGAAGACAAGCTCAAGGTGATGACCGAGACCAGCATCGAAACCATCATCGCCACCGCG
CGCCAGGAGCAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCGGCGCCGGGCGG
CGTCGCCCAGGTCCGCGAGAGCGCCGCGATGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCGGCC
ACGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTCGAACACATGGTCGACACCGTACTGTATTTCGAGGGCGAA
TCAGACGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGAGTGTTCGGCATGAC
CGACAAAGGCCTGAAGGAAGTGAGCAACCCTTCGGCGATCTTCCTCACGCGGGCCCAGGAAGCGGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTCGACACCAGTCACCTGGCGAATCCG
CGGCGGGTGACCCTGGGCCTCGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGGCGGTATCCCGAC
CTACGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGATGGCGG
CGGTGATGTCCAGCCTGCGCAACCGCCCGCTGCCGCACGACCTGCTGGTGTTCGGCGAGGTCGGGCTGTCCGGCGAGGTG
CGTCCGGTGCCGAGCGGCCAGGAGCGCCTGAAGGAAGCCGGCAAGCATGGTTTCAAGCGTGCCATCGTACCCCTCGGCAA
CGCGCCGAAGGAGGCGCCGGCGGGATTGCAGGTGATCGCCGTGACGCGCCTCGAGCAGGCCCTGGACGCCCTCTTCGAGT
GA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(74-219)

Subunit ChlI of Mg-chelatase (ChlI)

(361-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.238

100

0.483
  radA Streptococcus pneumoniae Rx1

46.288

100

0.468
  radA Streptococcus pneumoniae D39

46.288

100

0.468
  radA Streptococcus pneumoniae R6

46.288

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.288

100

0.468
  radA Streptococcus mitis SK321

46.389

100

0.468
  radA Streptococcus mitis NCTC 12261

46.171

100

0.466