Detailed information NTG0956540

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PA6536_RS07985
• Genome accession: NZ_CP173022
• Coordinates: 1633834..1634838 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PA6536
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1628834..1639838

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PA6536_RS07955 (PA6536_01574)	fghA	1628926..1629777 (+)	852	WP_043542901.1	S-formylglutathione hydrolase	-
PA6536_RS07960 (PA6536_01575)	ispF	1629848..1630321 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PA6536_RS07965 (PA6536_01576)	truD	1630318..1631385 (+)	1068	WP_034001159.1	tRNA pseudouridine(13) synthase TruD	-
PA6536_RS07970 (PA6536_01577)	surE	1631373..1632122 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PA6536_RS07975 (PA6536_01578)	-	1632155..1632790 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PA6536_RS07980 (PA6536_01579)	-	1632836..1633729 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PA6536_RS07985 (PA6536_01580)	rpoS	1633834..1634838 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PA6536_RS07990 (PA6536_01581)	fdxA	1635265..1635588 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PA6536_RS07995 (PA6536_01582)	mutS	1635655..1638222 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PA6536_RS08000 (PA6536_01583)	-	1638348..1639355 (-)	1008	WP_043096650.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=956540 PA6536_RS07985 WP_003113871.1 1633834..1634838(+) (rpoS) [Pseudomonas aeruginosa strain PA6536]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=956540 PA6536_RS07985 WP_003113871.1 1633834..1634838(+) (rpoS) [Pseudomonas aeruginosa strain PA6536]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653