Detailed information NTG0956493

Bioinformatically predicted

Overview

• Name: radA/sms
• Type: Machinery gene
• Locus tag: PA6567_RS28915
• Genome accession: NZ_CP173021
• Coordinates: 6108343..6109704 (-)
• Length: 453 a.a.
• NCBI ID: WP_019372180.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PA6567
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 6103343..6114704

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PA6567_RS28890 (PA6567_05682)	-	6103478..6103681 (-)	204	WP_003094856.1	YbdD/YjiX family protein	-
PA6567_RS28895 (PA6567_05683)	-	6103730..6105817 (-)	2088	WP_397469155.1	carbon starvation CstA family protein	-
PA6567_RS28900 (PA6567_05684)	-	6105849..6106877 (+)	1029	WP_050161940.1	IS30-like element ISPsp8 family transposase	-
PA6567_RS28905 (PA6567_05685)	-	6107250..6107756 (-)	507	WP_003094862.1	DUF3015 domain-containing protein	-
PA6567_RS28910 (PA6567_05686)	mapZ	6107959..6108336 (+)	378	WP_043096277.1	cyclic di-GMP-binding protein MapZ	-
PA6567_RS28915 (PA6567_05687)	radA/sms	6108343..6109704 (-)	1362	WP_019372180.1	DNA repair protein RadA	Machinery gene
PA6567_RS28920 (PA6567_05688)	-	6109814..6110248 (+)	435	WP_043096275.1	CopD family protein	-
PA6567_RS28925 (PA6567_05689)	-	6110310..6110564 (-)	255	WP_003104887.1	YdcH family protein	-
PA6567_RS28930 (PA6567_05690)	-	6110639..6111190 (-)	552	WP_003121338.1	ankyrin repeat domain-containing protein	-
PA6567_RS28935 (PA6567_05691)	katB	6111244..6112785 (-)	1542	WP_003094881.1	catalase KatB	-
PA6567_RS28940	-	6112892..6113266 (-)	375	WP_172965164.1	hypothetical protein	-
PA6567_RS28945 (PA6567_05692)	mscL	6113309..6113722 (+)	414	WP_003104883.1	large-conductance mechanosensitive channel protein MscL	-
PA6567_RS28950 (PA6567_05693)	-	6113827..6114603 (-)	777	WP_003110878.1	ferredoxin--NADP reductase	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 48438.86 Da
• Isoelectric Point: 6.8357

>NTDB_id=956493 PA6567_RS28915 WP_019372180.1 6108343..6109704(-) (radA/sms) [Pseudomonas aeruginosa strain PA6567]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVVEAVPSGSGRGGWAGQQANLKTLAEVSVEEMPRFTTGSTELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLASRVPALYVTGEESQQQVAMRARRLSLPEDKLKVMTETSIETIIATA
RQEQPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAAMLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEV
RPVPSGQERLKEAGKHGFKRAIVPLGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide

• Length: 1362 bp

>NTDB_id=956493 PA6567_RS28915 WP_019372180.1 6108343..6109704(-) (radA/sms) [Pseudomonas aeruginosa strain PA6567]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGCGCGGACTG
CGGGGCCTGGAACACCCTGGTGGAGACCGTCGTCGAGGCCGTGCCGAGCGGCTCCGGCCGCGGCGGCTGGGCCGGCCAGC
AGGCCAACCTGAAGACCCTGGCGGAGGTCAGCGTCGAGGAAATGCCGCGCTTCACGACCGGCTCCACCGAACTGGACCGG
GTTCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCATTCTCCT
GCAGACCCTTTGCAACCTGGCCAGCCGCGTCCCGGCGCTGTACGTCACCGGCGAGGAATCCCAGCAGCAGGTGGCGATGC
GCGCGCGGCGCCTGTCGTTGCCGGAAGACAAGCTCAAGGTGATGACCGAGACCAGCATCGAAACCATCATCGCCACCGCG
CGCCAGGAGCAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCGGCGCCGGGCGG
CGTCGCCCAGGTCCGCGAGAGCGCCGCGATGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCGGCC
ACGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTCGAACACATGGTCGACACCGTACTGTATTTCGAGGGCGAA
TCAGACGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGAGTGTTCGGCATGAC
CGACAAAGGCCTGAAGGAAGTGAGCAACCCTTCGGCGATCTTCCTCACGCGGGCCCAGGAAGCGGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTCGACACCAGTCACCTGGCGAATCCG
CGGCGGGTGACCCTGGGCCTCGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGGCGGTATCCCGAC
CTACGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGATGGCGG
CGGTGATGTCCAGCCTGCGCAACCGCCCGCTGCCGCACGACCTGCTGGTGTTCGGCGAGGTCGGGCTGTCCGGCGAGGTG
CGTCCGGTGCCGAGCGGCCAGGAGCGCCTGAAGGAAGCCGGCAAGCATGGTTTCAAGCGTGCCATCGTACCCCTCGGCAA
CGCGCCGAAGGAGGCGCCGGCGGGATTGCAGGTGATCGCCGTGACGCGCCTCGAGCAGGCCCTGGACGCCCTCTTCGAGT
GA

Domains

Predicted by InterProScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (74-219)

• Subunit ChlI of Mg-chelatase (ChlI) (361-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA/sms	Bacillus subtilis subsp. subtilis str. 168	48.238	100	0.483
radA	Streptococcus pneumoniae Rx1	46.288	100	0.468
radA	Streptococcus pneumoniae D39	46.288	100	0.468
radA	Streptococcus pneumoniae R6	46.288	100	0.468
radA	Streptococcus pneumoniae TIGR4	46.288	100	0.468
radA	Streptococcus mitis SK321	46.389	100	0.468
radA	Streptococcus mitis NCTC 12261	46.171	100	0.466