Detailed information NTG0956435

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PA6567_RS08250
• Genome accession: NZ_CP173021
• Coordinates: 1697773..1698777 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PA6567
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1692773..1703777

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PA6567_RS08220 (PA6567_01623)	fghA	1692865..1693716 (+)	852	WP_043542901.1	S-formylglutathione hydrolase	-
PA6567_RS08225 (PA6567_01624)	ispF	1693787..1694260 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PA6567_RS08230 (PA6567_01625)	truD	1694257..1695324 (+)	1068	WP_034001159.1	tRNA pseudouridine(13) synthase TruD	-
PA6567_RS08235 (PA6567_01626)	surE	1695312..1696061 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PA6567_RS08240 (PA6567_01627)	-	1696094..1696729 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PA6567_RS08245 (PA6567_01628)	-	1696775..1697668 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PA6567_RS08250 (PA6567_01629)	rpoS	1697773..1698777 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PA6567_RS08255 (PA6567_01630)	fdxA	1699204..1699527 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PA6567_RS08260 (PA6567_01631)	mutS	1699594..1702161 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PA6567_RS08265 (PA6567_01632)	-	1702287..1703294 (-)	1008	WP_043096650.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=956435 PA6567_RS08250 WP_003113871.1 1697773..1698777(+) (rpoS) [Pseudomonas aeruginosa strain PA6567]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=956435 PA6567_RS08250 WP_003113871.1 1697773..1698777(+) (rpoS) [Pseudomonas aeruginosa strain PA6567]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653