Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PA7077_RS20595 Genome accession   NZ_CP173020
Coordinates   4433845..4434210 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain PA7077     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4428845..4439210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA7077_RS20580 (PA7077_04097) pilK 4430189..4431064 (-) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -
  PA7077_RS20585 (PA7077_04098) pilJ 4431125..4433173 (-) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  PA7077_RS20590 (PA7077_04099) - 4433258..4433794 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  PA7077_RS20595 (PA7077_04100) pilH 4433845..4434210 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PA7077_RS20600 (PA7077_04101) pilG 4434257..4434664 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PA7077_RS20605 (PA7077_04102) gshB 4434919..4435872 (+) 954 WP_003100943.1 glutathione synthase -
  PA7077_RS20610 (PA7077_04103) - 4436019..4436912 (+) 894 WP_003114892.1 energy transducer TonB -
  PA7077_RS20615 (PA7077_04104) - 4436961..4437530 (+) 570 WP_003100947.1 YqgE/AlgH family protein -
  PA7077_RS20620 (PA7077_04105) ruvX 4437530..4437964 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  PA7077_RS20625 (PA7077_04106) pyrR 4438076..4438588 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=956366 PA7077_RS20595 WP_003084587.1 4433845..4434210(-) (pilH) [Pseudomonas aeruginosa strain PA7077]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=956366 PA7077_RS20595 WP_003084587.1 4433845..4434210(-) (pilH) [Pseudomonas aeruginosa strain PA7077]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364