Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   LGMS210922A_RS01980 Genome accession   NZ_AP026069
Coordinates   410384..411034 (+) Length   216 a.a.
NCBI ID   WP_265150255.1    Uniprot ID   A0AA43PDT3
Organism   Lactococcus garvieae strain MS210922A     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 405384..416034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGMS210922A_RS01965 (LGMS210922A_03800) sufB 405676..407073 (+) 1398 WP_004259194.1 Fe-S cluster assembly protein SufB -
  LGMS210922A_RS01970 (LGMS210922A_03810) - 407429..408985 (+) 1557 WP_176490086.1 ABC-F family ATP-binding cassette domain-containing protein -
  LGMS210922A_RS01975 (LGMS210922A_03820) - 409151..410326 (+) 1176 WP_004259189.1 SLC13 family permease -
  LGMS210922A_RS01980 (LGMS210922A_03830) comEA/celA/cilE 410384..411034 (+) 651 WP_265150255.1 helix-hairpin-helix domain-containing protein Machinery gene
  LGMS210922A_RS01985 comEC 411054..413264 (+) 2211 WP_265150257.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LGMS210922A_RS01990 (LGMS210922A_03850) - 413419..414195 (+) 777 WP_014024338.1 alpha/beta hydrolase -
  LGMS210922A_RS01995 (LGMS210922A_03860) - 414391..414606 (+) 216 WP_003135074.1 F0F1 ATP synthase subunit C -
  LGMS210922A_RS02000 (LGMS210922A_03870) atpB 414661..415374 (+) 714 WP_004259176.1 F0F1 ATP synthase subunit A -
  LGMS210922A_RS02005 (LGMS210922A_03880) atpF 415388..415894 (+) 507 WP_004259173.1 F0F1 ATP synthase subunit B -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23960.11 Da        Isoelectric Point: 5.1231

>NTDB_id=95624 LGMS210922A_RS01980 WP_265150255.1 410384..411034(+) (comEA/celA/cilE) [Lactococcus garvieae strain MS210922A]
MKKITEYINENLKIIVGVILALTILVVFYWNKKVLDSPKQEESRSEWAEVSKNKEASGKKKAEKDEDEDENEIIVDVKGA
VKKPGIYKLSSKNRVSDAVASAGGFTEEAERKGINLAKKLQDEAEVYVPVRGEAETNHLLETKDNTSKTVEKSKININTA
DLTELQQLSGVGAKKAQDILDYRSENGSFQSVEELTKVSGFGPKTLEKLKEAITVD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=95624 LGMS210922A_RS01980 WP_265150255.1 410384..411034(+) (comEA/celA/cilE) [Lactococcus garvieae strain MS210922A]
ATGAAAAAAATAACAGAATATATAAATGAAAATTTGAAAATCATTGTTGGAGTTATTTTGGCATTGACTATTTTAGTTGT
CTTTTATTGGAATAAAAAAGTCCTGGATAGCCCAAAGCAAGAAGAAAGCCGCTCCGAGTGGGCGGAGGTGAGCAAGAACA
AGGAAGCTTCAGGAAAGAAAAAAGCCGAAAAAGATGAAGACGAAGATGAGAATGAAATCATCGTTGATGTCAAAGGCGCT
GTCAAAAAGCCAGGCATCTACAAGCTATCCTCCAAAAACCGTGTATCTGATGCAGTAGCAAGTGCTGGTGGTTTTACGGA
AGAAGCAGAGAGGAAGGGAATAAATCTGGCAAAAAAGTTACAAGACGAAGCTGAAGTTTATGTTCCAGTGCGAGGGGAAG
CAGAGACAAATCACTTGTTAGAAACCAAAGACAATACCAGCAAAACAGTAGAAAAAAGCAAAATTAATATTAATACAGCT
GATTTAACTGAATTGCAGCAACTGAGTGGTGTGGGAGCAAAAAAAGCCCAAGATATTCTGGATTACCGTTCTGAAAATGG
TTCTTTTCAGTCCGTGGAAGAGTTGACCAAGGTGAGTGGATTTGGCCCTAAAACATTAGAAAAATTAAAAGAAGCAATCA
CTGTAGATTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(74-128)

Helix-hairpin-helix motif (HHH_3)

(151-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

48.182

100

0.491
  comEA/celA/cilE Streptococcus mitis NCTC 12261

47.489

100

0.481
  comEA/celA/cilE Streptococcus mitis SK321

47.489

100

0.481
  comEA/celA/cilE Streptococcus pneumoniae Rx1

47.273

100

0.481
  comEA/celA/cilE Streptococcus pneumoniae D39

47.273

100

0.481
  comEA/celA/cilE Streptococcus pneumoniae R6

47.273

100

0.481
  comEA Lactococcus lactis subsp. cremoris KW2

44.796

100

0.458
  comEA Streptococcus thermophilus LMD-9

35.931

100

0.384
  comEA Latilactobacillus sakei subsp. sakei 23K

35.683

100

0.375

Multiple sequence alignment