Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   ACF2JY_RS20220 Genome accession   NZ_CP172966
Coordinates   3894057..3894287 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain cel     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3889057..3899287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2JY_RS20210 (ACF2JY_20210) spoVT 3889782..3890318 (-) 537 WP_003218365.1 stage V sporulation protein T -
  ACF2JY_RS20215 (ACF2JY_20215) mfd 3890454..3893987 (-) 3534 WP_046380724.1 transcription-repair coupling factor -
  ACF2JY_RS20220 (ACF2JY_20220) subA/fin 3894057..3894287 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  ACF2JY_RS20225 (ACF2JY_20225) pth 3894347..3894913 (-) 567 WP_046380723.1 aminoacyl-tRNA hydrolase -
  ACF2JY_RS20230 (ACF2JY_20230) rplYB 3895020..3895634 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  ACF2JY_RS20235 (ACF2JY_20235) prsS 3895719..3896672 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  ACF2JY_RS20240 (ACF2JY_20240) glmU 3896695..3898065 (-) 1371 WP_046380722.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  ACF2JY_RS20245 (ACF2JY_20245) spoVG 3898258..3898551 (-) 294 WP_003218346.1 septation regulator SpoVG -
  ACF2JY_RS20250 (ACF2JY_20250) ridA 3898746..3899123 (-) 378 WP_046380721.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=956203 ACF2JY_RS20220 WP_003243417.1 3894057..3894287(-) (subA/fin) [Bacillus subtilis strain cel]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=956203 ACF2JY_RS20220 WP_003243417.1 3894057..3894287(-) (subA/fin) [Bacillus subtilis strain cel]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1