Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ACF2JY_RS18140 Genome accession   NZ_CP172966
Coordinates   3485031..3485465 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain cel     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3480031..3490465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2JY_RS18125 (ACF2JY_18125) epsK 3480661..3481512 (-) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -
  ACF2JY_RS18130 (ACF2JY_18130) ephJ 3481493..3482581 (-) 1089 WP_003246551.1 lipoprotein -
  ACF2JY_RS18135 (ACF2JY_18135) topB 3482783..3484966 (-) 2184 WP_029317313.1 DNA topoisomerase III -
  ACF2JY_RS18140 (ACF2JY_18140) lrpC 3485031..3485465 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  ACF2JY_RS18145 (ACF2JY_18145) ydzA 3485650..3485940 (+) 291 WP_015252794.1 DUF3817 domain-containing protein -
  ACF2JY_RS18150 (ACF2JY_18150) amj 3485985..3486794 (-) 810 WP_032722918.1 lipid II flippase Amj -
  ACF2JY_RS18155 (ACF2JY_18155) ydaG 3487300..3487722 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  ACF2JY_RS18160 (ACF2JY_18160) ydaF 3487800..3488351 (-) 552 WP_046380787.1 GNAT family N-acetyltransferase -
  ACF2JY_RS18165 (ACF2JY_18165) lyxE 3488439..3488942 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  ACF2JY_RS18170 (ACF2JY_18170) ydaD 3488958..3489818 (-) 861 WP_038428370.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=956185 ACF2JY_RS18140 WP_003246585.1 3485031..3485465(-) (lrpC) [Bacillus subtilis strain cel]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=956185 ACF2JY_RS18140 WP_003246585.1 3485031..3485465(-) (lrpC) [Bacillus subtilis strain cel]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1